RNA id: TU346506



Basic Information


Item Value
RNA id TU346506
length 423
lncRNA type sense_over
GC content 0.40
exon number 1
gene id CI01000092_02395791_02407508
representative False

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2395601 ~ 2407642 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATACATGTGCTTACATAGACCATGAGAATGCCAAGCTGCTTGTGGACAGATTGCACCAGAAAGGCATTCTTCTCACAAACAGTATTTCAGAGTTGCTAGCAGTTATTGCATGCAATACTACCACCAAGCACTGCATGTATCACACCTGTGCTAAGTGCTGCTACAACGAGATTGAGTTTGAAGGACCTCTGGAGGATACTGAAATTACATGGCAGCAGTGGTCCAGAGTAGTCACATCTGAAGAAGAGAAAACCTTCACTAACTTTGCAAAAGTCACACAAAGTGTGACTGATTGTACAGTGATCAAAGGTTAAAAAGAATGTGAACATGAACAGTGAATGATAGCAAAGCAGTGTCCTAATGCACAAAGATAAATGATTATTCCCACATGTACATAGTAACAACGCTAAGGAACATCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346504 lncRNA upstream 1129 2405226 ~ 2405562 (+) True G304969
TU346505 lncRNA upstream 1155 2405138 ~ 2405536 (+) False G304969
TU346503 lncRNA upstream 4186 2402195 ~ 2402505 (+) True G304968
TU346502 lncRNA upstream 10565 2395910 ~ 2396126 (+) True G304967
TU346501 lncRNA upstream 12323 2394130 ~ 2394368 (+) True G304966
TU346508 lncRNA downstream 233 2407346 ~ 2407642 (+) True CI01000092_02395791_02407508
TU346509 lncRNA downstream 1093 2408206 ~ 2408820 (+) True G304972
TU346510 lncRNA downstream 2183 2409296 ~ 2409733 (+) True G304973
TU346512 lncRNA downstream 4507 2411620 ~ 2411972 (+) False CI01000092_02411552_02412283
TU346513 lncRNA downstream 5469 2413539 ~ 2413716 (+) True G304976
CI01000092_02358901_02363225.mRNA mRNA upstream 42229 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02279826_02285934.mRNA mRNA upstream 120612 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02186791_02187942.mRNA mRNA upstream 218749 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_01989763_02003920.mRNA mRNA upstream 402561 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 420004 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_02411552_02412283.mRNA mRNA downstream 4439 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02418597_02419541.mRNA mRNA downstream 11295 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02470059_02471839.mRNA mRNA downstream 62239 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02661524_02662121.mRNA mRNA downstream 254270 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02721458_02724152.mRNA mRNA downstream 314280 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
TU346472 other upstream 88457 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1090168 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1260195 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1319234 3726347 ~ 3861333 (+) False G305596

Expression Profile