RNA id: TU346513


Basic Information

Item Value
RNA id TU346513
length 154
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G304976
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2413539 ~ 2413716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTGTAGCGCCCCCTAGCGTGTTTAACTATTTTTGTGGGGTGCGCTCCCCGAATTCCTATTTAGAAAATCTCTCTATAATATTAATTAATGCGCTAAATGTAATTCCTTAATTATTACTACCTACTTGTTACCATTTACCTTAGTGGCAGCTTTTAACTTAATGCAAAGTGATCATACAATATCTATATAGCCAAATTAAAATAAAACACTAAGTATATATAGCTATCTCAAGTGCTTGGTTGAGTAAACATTAACTCTTATAGTTACATTAATATTCACCCTTTTTAAATGACTATCAATACTTTAAGTGCAATAAACATCAATTTACAGGTCACTTATCTTAATCAGTAGTGATAAACACTTTACTTTACACCAGTCTACTGTAAACTCAATAATATCTTGCCTTAAGTATCAAAATTATCAATATTGTAAACTCAATGTAATGCAAATCTTCAACAGAAATTCGTTTGAACTATTTACTGGAAAAAATATAGTATGTACATATATACAGTTCAAATATCAACAGAGCAATTCAGATGAAACACAATTCCCCAAAATTAAAACTAAGCCGGCAAAATGACTAAATGGCCACTCAATGAAATAAAATGAATACCCGGACAGTCAGAGTTGGACACGGCGCAGGCCTGTAGCGTTGCTTGAGAGCGGGGAGACCTTAAACACAACGGTCGCTTTGCACCGTGGCGCAGGAAAAAAAACCTCATTGCTGTAGTAATGCTGATCGGCGCGTCGTCCTTCCCGCCGTGGCAACGCAATGTTTGCGATGCTGATGATTGAAGACGTCGTCCGACAGCTAAGCAGAGGATGGTTCTGGAGATAAGTGCTTCTTCAGACGATGCACAAAAGGGCAACCGAGCAGGCTACTCTCTGGCAAAGTCCTGATAACTAAATCGTGCTGACTAGCAGTCCACGAGTTCCTCAAAACCATTAACTTTCACACTGTAAACTTAGTCAAATGTCTGTAACTCACTCTTCGTGCAGTATACAAGTACATCTACTATCACACGCATTAAAGTGACAGTCACAGCGCAGTTCTCACTCATGTCTCTCCCTCTTCTCTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346512 lncRNA upstream 610 2411620 ~ 2411972 (+) False CI01000092_02411552_02412283
TU346510 lncRNA upstream 2849 2409296 ~ 2409733 (+) True G304973
TU346509 lncRNA upstream 3762 2408206 ~ 2408820 (+) True G304972
TU346508 lncRNA upstream 4940 2407346 ~ 2407642 (+) True CI01000092_02395791_02407508
TU346506 lncRNA upstream 5469 2406691 ~ 2407113 (+) False CI01000092_02395791_02407508
TU346517 lncRNA downstream 27261 2440977 ~ 2441268 (+) True G304980
TU346522 lncRNA downstream 34670 2448386 ~ 2448653 (+) True G304984
TU346525 lncRNA downstream 48145 2461861 ~ 2462108 (+) True G304987
TU346641 lncRNA downstream 95326 2509042 ~ 2511516 (+) False G305084
TU346642 lncRNA downstream 95326 2509042 ~ 2517201 (+) False G305084
CI01000092_02395791_02407508.mRNA mRNA upstream 5071 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02358901_02363225.mRNA mRNA upstream 48120 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02279826_02285934.mRNA mRNA upstream 126503 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02186791_02187942.mRNA mRNA upstream 224640 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_01989763_02003920.mRNA mRNA upstream 408452 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_02418597_02419541.mRNA mRNA downstream 4692 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02470059_02471839.mRNA mRNA downstream 55636 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02661524_02662121.mRNA mRNA downstream 247667 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02721458_02724152.mRNA mRNA downstream 307677 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
CI01000092_02739990_02745224.mRNA mRNA downstream 326274 2739990 ~ 2745247 (+) True CI01000092_02739990_02745224
TU346472 other upstream 94348 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1096059 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1253592 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1312631 3726347 ~ 3861333 (+) False G305596

Expression Profile