RNA id: CI01000092_02418597_02419541.mRNA



Basic Information


Item Value
RNA id CI01000092_02418597_02419541.mRNA
length 1589
RNA type mRNA
GC content 0.36
exon number 1
gene id CI01000092_02418597_02419541
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2418408 ~ 2419996 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATAAAATGCAAGCCACATTTGAAGGTTAAAGGACACCATTTATGCTTAAATGTAAGTATATAGTGTTTTTGCTTATATTGTTAAATGCTTCTGTAAATATATTTTCTGTGCATTAACTGTAAACTGTTAAACTAAACTGTAACTATTAGCTGCTTTTATGTCTTCAAAGTGAACTTTGATCAAAGAAATGGATGACAGAACGTTCAACTTCTCTCATAAAGAACTCTACTTGATTGGATTCACGGATCTCCAACAGTATCGGCAATACCTTTTCATTCCTTTTCTCATAATCTTTTCTTTCACGTTGTTTGCAAACTCTGTTATAATTCTGGTGATTGTAAAAGAAAGCAAGTTACATGCACCCATGTACATTCTGATCGGGTTAATTGCAGCTCTCGGGTTTATACAGCCAATATTTCTTGTTCCAAGAATGTTAATCAGTTTTGGGTTTGGCAGGAATATGATTTACAAAGATGAATGTCTTGTTCAAATGTTTTGTCTGCATATGGCAGGATGTTTCCAGTTGTCAATTTTGGTTATGATGGCAGTCGACAGATTTTTTGCCATTATTTTTCCCTTACGGTACCATGACTATGTAAACATTAAAACATCATTAATGATCTGTTTCTCCTTTTTTTTCCGTAACTTGCTTTGTGTTGTTTCGATGGTCAGCCTGATTGGGCCACTATATTTTTGTAAATCAAATGTGATTTATCATTGTGTTTGTGAGCATACATCAGTTGTTAATTTAGCCTGTGGTGATGTGACTAAGAACCATATAGCTGGAACAATCGCTTTCATCATAGTATCATGTGATTGTGCATTTGTAATCTGCTCTTACATTGTTATTTTTGTCATTATATTTCGCTCTCCTTCTGGTGAGTCACGCCAAAAAGCCATCTTGACATGTAGCACACATTTAATGGCATTATCGGTGGGATTTTTCTGTGTTGTTGTTGCATTTGTTGGCTACAGGGTGCCTAACGTACCTAGAGATATCCGTGTATTAAGCACCTTGTCATATCATCTTATTCCGAACTGCTTTAACCCAGTAATCTATGGAGTAAGAACAAAGGAAATCAGAGTTCAGGTTGTTAAATATTTATCTTCTAAAAAGGTTGAATCATATTAACTTTCTCTCTTTTGTTTTATTTTAATGGCTCATTGTACATGAAGGAAAATTTCTATTAGTTCATGTATATCATGTATATATGGAAATCCTAGGGCCAGCTTTGGCTTCATGCGGCATGATGAATCAATCTTCAAGCAAAAGGAACTGGATGAATATTTCAATTCTACCGATCCCGATCTGAATTCTGACTTGTGATGCAGACTCAATCATAATGACACCTTGGTCGTTCGTTGGCCAGAGGAGATCTCCCCCCTCAACTGAAGGTTTTTCTCCATTCTGTCACCTGATGGAGTTTGGGTTCCTTGCCACTGTCACCTCTGCCTTGCTTAGTTAGAGACACTTAAAATTCAGCAATATCATTGTTCTGACAGCTGTTGTATGAGAACTGAACTGAGCTGGATGATATAAATTAAGGTGACTTGACTTGAAACATTTGCTGTAGTTCTAGAATGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346513 lncRNA upstream 4692 2413539 ~ 2413716 (+) True G304976
TU346512 lncRNA upstream 6436 2411620 ~ 2411972 (+) False CI01000092_02411552_02412283
TU346510 lncRNA upstream 8675 2409296 ~ 2409733 (+) True G304973
TU346509 lncRNA upstream 9588 2408206 ~ 2408820 (+) True G304972
TU346508 lncRNA upstream 10766 2407346 ~ 2407642 (+) True CI01000092_02395791_02407508
TU346517 lncRNA downstream 20981 2440977 ~ 2441268 (+) True G304980
TU346522 lncRNA downstream 28390 2448386 ~ 2448653 (+) True G304984
TU346525 lncRNA downstream 41865 2461861 ~ 2462108 (+) True G304987
TU346641 lncRNA downstream 89046 2509042 ~ 2511516 (+) False G305084
TU346642 lncRNA downstream 89046 2509042 ~ 2517201 (+) False G305084
CI01000092_02411552_02412283.mRNA mRNA upstream 5625 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02395791_02407508.mRNA mRNA upstream 10897 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02358901_02363225.mRNA mRNA upstream 53946 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02279826_02285934.mRNA mRNA upstream 132329 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02186791_02187942.mRNA mRNA upstream 230466 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_02470059_02471839.mRNA mRNA downstream 49356 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02661524_02662121.mRNA mRNA downstream 241387 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02721458_02724152.mRNA mRNA downstream 301397 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
CI01000092_02739990_02745224.mRNA mRNA downstream 319994 2739990 ~ 2745247 (+) True CI01000092_02739990_02745224
CI01000092_02818349_02838255.mRNA mRNA downstream 397624 2817620 ~ 2838255 (+) True CI01000092_02818349_02838255
TU346472 other upstream 100174 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1101885 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1247312 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1306351 3726347 ~ 3861333 (+) False G305596

Expression Profile