RNA id: TU346685


Basic Information

Item Value
RNA id TU346685
length 382
lncRNA type sense_over
GC content 0.40
exon number 3
gene id CI01000092_02661524_02662121
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2661383 ~ 2662183 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCGAAAGACAATGAAGAACTCCACTAAGTCATCAGAATACACGCTGGAATACGAGTACTACTACGATTACATGGAACCGGTCTTTGTGGATGCCAGTACACTGAAGTACAACAGATATTCAATTGTCCTGATATTCTGGATCATTCTAGCTGCATTTATAGGGTTCTTCTTCTTGATTTTGTCATTTATATCACACTCGGGGCAACTACCAAGGGGTCCTCATGTCAAAAAATCTGGTTTGCCACTGATGAAAGGCTATGGATCTCACCAGAAAAGATAGAAATAAGAAGCAACTTCAAGACGACACTAAAGCCATGATGATCTTTAGTGAAAACAGACACTGTAGAAGCATCACTGCTGACAACTGCCATTAAACCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346627 lncRNA upstream 44352 2616237 ~ 2617160 (+) True G305071
TU346643 lncRNA upstream 137327 2509042 ~ 2524185 (+) True G305084
TU346642 lncRNA upstream 144311 2509042 ~ 2517201 (+) False G305084
TU346641 lncRNA upstream 149996 2509042 ~ 2511516 (+) False G305084
TU346525 lncRNA upstream 199404 2461861 ~ 2462108 (+) True G304987
TU346712 lncRNA downstream 40582 2702765 ~ 2702979 (+) True G305137
TU346761 lncRNA downstream 55791 2717974 ~ 2718193 (+) True G305171
TU346762 lncRNA downstream 56259 2718442 ~ 2718646 (+) True G305172
TU346708 lncRNA downstream 65120 2727303 ~ 2727705 (+) True G305133
TU346770 lncRNA downstream 72254 2734437 ~ 2734688 (+) True G305180
CI01000092_02470059_02471839.mRNA mRNA upstream 189561 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02418597_02419541.mRNA mRNA upstream 241516 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02411552_02412283.mRNA mRNA upstream 248729 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02395791_02407508.mRNA mRNA upstream 254001 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02358901_02363225.mRNA mRNA upstream 297050 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02721458_02724152.mRNA mRNA downstream 59210 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
CI01000092_02739990_02745224.mRNA mRNA downstream 77807 2739990 ~ 2745247 (+) True CI01000092_02739990_02745224
CI01000092_02818349_02838255.mRNA mRNA downstream 155437 2817620 ~ 2838255 (+) True CI01000092_02818349_02838255
CI01000092_02958119_02966042.mRNA mRNA downstream 295841 2958024 ~ 2966463 (+) True CI01000092_02958119_02966042
CI01000092_02977237_02979350.mRNA mRNA downstream 315054 2977237 ~ 2979378 (+) True CI01000092_02977237_02979350
TU346472 other upstream 343278 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1344989 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1005125 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1064164 3726347 ~ 3861333 (+) False G305596

Expression Profile