RNA id: CI01000092_02739990_02745224.mRNA


Basic Information

Item Value
RNA id CI01000092_02739990_02745224.mRNA
length 800
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000092_02739990_02745224
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2739990 ~ 2745247 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAGACACCCCTTTGACCACAATGATTATAGACCTGTAGCGCTCACCTCACATATTATGAAGATGTTTGAAAGACAGGTTCTCTCCTACATCAAGGCTAGCGTGTCAAATTACATGGATCCTCTACAGTTTGCATATCAGTCTAACATGGGTGTAGATGATGCCCTCATTTACATGCTACAGAGGACCTATGCACATCTGGACACTCCTGATGCATCTGTGAGGTTCTTATTCTTTGATTTCTCAAGCGCCTTCAATACGATCCAGCCTCGATTGCTATGTGAGAAAATTGAGAAGAATGCAGGTAGATTAATCATTGGTCTAGTGGTGTATGAACTAACTATCTTGCAGACCATAGAGGAAGAGGACACAGTCAATTCTGATCACCATCCGGGACATGAAGTGGACATGGTCTCCAGTCAAAGATATCTTGGTGTGCAGCTTGACAACAAGCTGGACTGGAAGAGCCACATGGAGACAGTGTACAAGAAGGGTCAAAGCCGAATTTATTTCTTAAGGATGCTGAGGCACAACAAGAATCATACTTACATTAACATGCTGTCATTTATCTTTCAGTACATTCGAAATATGATGTGCTTGGTGAGCTGGGACGGGGATCCTTTGGCTGTGTCAAAATGGGAATTCAGAAGTCTGATCACAGAAAGGTCGCCATCAAATTCAGAAATAAAACTGGATATGAAGAAGGCGAGTTCTTGTAAGTATAGTATATTTGGAGCACCAAATAGAACTTTAAAAGATGTATCCACAACAGTATAGATAATATATGAATACAAATTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346773 lncRNA upstream 2122 2737512 ~ 2737868 (+) True G305183
TU346770 lncRNA upstream 5302 2734437 ~ 2734688 (+) True G305180
TU346708 lncRNA upstream 12285 2727303 ~ 2727705 (+) True G305133
TU346762 lncRNA upstream 21344 2718442 ~ 2718646 (+) True G305172
TU346761 lncRNA upstream 21797 2717974 ~ 2718193 (+) True G305171
TU346777 lncRNA downstream 2254 2747501 ~ 2747707 (+) True G305187
TU346778 lncRNA downstream 3114 2748361 ~ 2748594 (+) True G305188
TU346799 lncRNA downstream 27764 2773011 ~ 2786207 (+) True G305206
TU346812 lncRNA downstream 51439 2796686 ~ 2796940 (+) True G305219
TU346813 lncRNA downstream 53387 2798634 ~ 2798880 (+) True G305220
CI01000092_02721458_02724152.mRNA mRNA upstream 15838 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
CI01000092_02661524_02662121.mRNA mRNA upstream 77817 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02470059_02471839.mRNA mRNA upstream 268039 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02418597_02419541.mRNA mRNA upstream 319994 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02411552_02412283.mRNA mRNA upstream 327207 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02818349_02838255.mRNA mRNA downstream 72373 2817620 ~ 2838255 (+) True CI01000092_02818349_02838255
CI01000092_02958119_02966042.mRNA mRNA downstream 212777 2958024 ~ 2966463 (+) True CI01000092_02958119_02966042
CI01000092_02977237_02979350.mRNA mRNA downstream 231990 2977237 ~ 2979378 (+) True CI01000092_02977237_02979350
CI01000092_03007267_03029327.mRNA mRNA downstream 262020 3007267 ~ 3029327 (+) True CI01000092_03007267_03029327
CI01000092_03080030_03082866.mRNA mRNA downstream 334315 3079562 ~ 3083624 (+) False CI01000092_03080030_03082866
TU346472 other upstream 421756 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1423467 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 922061 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 981100 3726347 ~ 3861333 (+) False G305596

Expression Profile