Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU346727 |
| length | 151 |
| lncRNA type | sense_over |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G305146 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 3051864 ~ 3076118 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU346881 | lncRNA | upstream | 79056 | 2972522 ~ 2972808 (+) | True | G305285 |
| TU346880 | lncRNA | upstream | 79420 | 2972237 ~ 2972444 (+) | True | G305284 |
| TU346866 | lncRNA | upstream | 137484 | 2914079 ~ 2914380 (+) | True | G305270 |
| TU346861 | lncRNA | upstream | 150896 | 2900690 ~ 2900968 (+) | True | G305265 |
| TU346736 | lncRNA | upstream | 168632 | 2878272 ~ 2883232 (+) | False | G305148 |
| TU346933 | lncRNA | downstream | 11750 | 3095149 ~ 3095387 (+) | True | G305336 |
| TU346965 | lncRNA | downstream | 72270 | 3155669 ~ 3156083 (+) | True | G305366 |
| TU346975 | lncRNA | downstream | 100364 | 3183763 ~ 3183984 (+) | True | G305376 |
| TU347059 | lncRNA | downstream | 231186 | 3314585 ~ 3314817 (+) | True | G305455 |
| TU347060 | lncRNA | downstream | 232286 | 3315685 ~ 3315984 (+) | True | G305456 |
| CI01000092_03007267_03029327.mRNA | mRNA | upstream | 22537 | 3007267 ~ 3029327 (+) | True | CI01000092_03007267_03029327 |
| CI01000092_02977237_02979350.mRNA | mRNA | upstream | 72486 | 2977237 ~ 2979378 (+) | True | CI01000092_02977237_02979350 |
| CI01000092_02958119_02966042.mRNA | mRNA | upstream | 85401 | 2958024 ~ 2966463 (+) | True | CI01000092_02958119_02966042 |
| CI01000092_02818349_02838255.mRNA | mRNA | upstream | 213609 | 2817620 ~ 2838255 (+) | True | CI01000092_02818349_02838255 |
| CI01000092_02739990_02745224.mRNA | mRNA | upstream | 306617 | 2739990 ~ 2745247 (+) | True | CI01000092_02739990_02745224 |
| CI01000092_03329908_03348045.mRNA | mRNA | downstream | 246509 | 3329908 ~ 3348319 (+) | True | CI01000092_03329908_03348045 |
| CI01000092_03433283_03442900.mRNA | mRNA | downstream | 349884 | 3433283 ~ 3442960 (+) | True | CI01000092_03433283_03442900 |
| CI01000092_03478431_03479274.mRNA | mRNA | downstream | 395032 | 3478431 ~ 3479793 (+) | True | CI01000092_03478431_03479274 |
| CI01000092_03532136_03542761.mRNA | mRNA | downstream | 448737 | 3532136 ~ 3542883 (+) | True | CI01000092_03532136_03542761 |
| CI01000092_03551674_03573437.mRNA | mRNA | downstream | 468275 | 3551674 ~ 3573492 (+) | True | CI01000092_03551674_03573437 |
| TU346472 | other | upstream | 733630 | 2317792 ~ 2318234 (+) | True | G304938 |
| TU345140 | other | upstream | 1735341 | 1315443 ~ 1316523 (+) | True | G303768 |
| TU347218 | other | downstream | 583909 | 3667308 ~ 3667965 (+) | True | G305584 |
| TU347240 | other | downstream | 642948 | 3726347 ~ 3861333 (+) | False | G305596 |
