RNA id: CI01000092_03693715_03694890.mRNA



Basic Information


Item Value
RNA id CI01000092_03693715_03694890.mRNA
length 4241
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000092_03693715_03694890
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3690550 ~ 3695228 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATAAATGGATTCATCCAAATGCATCAGAAAACATATGGTTAGACGTTGAGCAAACAATTTGTAAAGATATTCGCATTTCAGATTTACCATTCTACAGTAAGAGAATCAAAAAACACCCGTTTCAAAGCACCAACAATAGCAGCGGCTCTGACAGCTTGGTGGATATTTCACCAAATCACAAACACCCCTCTTACACCATCTAAATACACCTCCATTTGGGATAACCCAGGTTTCACTGCCAACAAGAAGCCACTTAACTTACATACACGGGCAGTCAAATCAAATCATCCATCCAATCAAAAATTAATACGTGGACCATTAACCTAGACCTTTCACCTCCTATCTCAGAGTTAATTAATACCCTCCTCAAAGAAACTACTGTCCAAAATCTATAGAATAATATCAAAATCAGATAATACACTATGCTTACCATATGCTAAATGGGAAACAGATTTATCCATTACTCCTGATCCTGATTTCTGGAAACAAATCTGTAAAAATATTTACTTTATGACAAATAATCCCAACCTACAACTCATACAGTATAAGGTAATCTCACCTAACTGGATGGAAATTGTCTAAAATGGGATTCACTTCAGAAACTTGTTCACATTGCTCACAAAATAACCCAGACACATATGTTCATGCCCTTTGGTATTGCACCCCAATTAAAAAATTCTGGGAAAATGTCACCGAATCACTATCTGTCTTTATGGGATGTCACATCCCAATGTCTCCCTCCCTTTGTCTATTAGGTGGTACATCCATAATCAATTTAAGCGACATAAACAAGCAGTTACTTTTAGCGGCGCTAACTATTGCCAAGAAAACTATCTTCATGAACTGGAAATCAAGGAATTCCCTACATATTGCATCCTGGAAAATCTTACTAATAGAATACATCTCCATGCAAACACTAGAATTACATCCCTCATGGTCATCTCTCATTACCCCCCAACAATCATAAATCTGCTGACCTTCTTTGTCTGGGCCTTGGGTCCTGTGCCCTGCAGCGTCTCTCCCTGACACCTTATTGTGGCATGATATGCACTGGGGTCTAATTTACTGTATGTGGTGATAATGGATGAATCAGTGGTAACCCTAATAATTAATAATAATGGTAATAATAATAATAATTATTATTTGCCCTCTTCCTCATCCTCAACCCCCCTCCCCATTTCTTAGCAACATTATTATTATTATTATTATTATTAATATAAATGTTATAAGTACTATTATTATAATTATTGTTGTCAAAAGTTTTTGTTGTCCTTATTGTTTTATTGTTACACTGGTTATCTGTTATCTTCTTACTCTTTGATTTATATTTGATCATATGTCTGCACCTTAACACCCAGATACACTCACACACATACACATAAACACATACACACACACACGCATACACGTGCACATACATACACGTACAGGAGTTTGTAACTAGACTTGTAGACGAGTTTGTAACTAGATCTAGCTACAATCTTGTAGACGAGATTGTAACTAGACTTGTACTTATTGTTGGCTGTTTGTAATGCATGTTGGCTGTTTGTAATGCATAATATATGTGTTTGTAATGCAAAAAAAAAAAAAAAAAATGCTGGATCTCTGAGCATGTCGCTTGCTGGCCATACCCCCAACAAGCACCGCTTGCCGGCCACACCCCCACTTTCATTGAGAAAGGCGTGAGAGCGAGCTCAATGCTGACAGCGCTCAGCTGAATATGACATGACGCTCTCCCATGACTCAGGTGAGACTCTTGGAATATATATTCACTCTAAAAGAGCGTATTTCTCCAGCATTTGTTGTAATATGCCCAATCTCTGAGCATGTCGTTTGCCGTCCACAACCCCGCGAGCCGCGTTCATTGAGGGCGTGTGTCTCACGATGAGAGCACTACAACGAGCTCAATACTGACAGCGCTCAGCTGAATATGACATGACGCTATCCCCTGACTCAGGTGAGACTTTATATTCATTCTAAAAGAGCGTATTTCTCCAGCATTTGTTGTAAAATGCCAAATCTCTGAACGTGTCATTTGCCAGCCACACCCCCGCGAGCCGCGTTCATTGAGGGCGTGTGCTCTCACGATGAGAGCGCTACGAGATCAATACTGACAGCGCTCAGCTGTATATGATATTGCCGCTCTCCCCTGACTCAGGTGAGACTTGTGGAATATATTAACTCTGAAAGAGCATATTTCTCTGGTGTTTGTTATTAAATGCCAAACCTCTAAGCGCTTCGCTTGCCGGCCCCGCCCCCGCAAGCCGCGTTCATTGACGGAGTGTGTTCTCACTATTCCTCTTCCACCCCATGTGTGCATCACAGTCCCTCACAGTGATTCAGTTCTAGAACCAATCCAGTCCCTTGCCACGCGGTCCGAGGCATGGCAGGCCATCCCCGGAGTGTCAGCTTGGGTGCTGGACATAGTAAAACGAGGTTATGTGCTCCAATTCGCTCAACAGGCTCTGTTATTCAACGGCATGGTTCAAACCTCTGTGGAAAGCAGGGACGCGCTCGTCCTGTGTTCCGAGGTAAACACCATGCTGGCGAAAGGAGCCATAGAGGTGGTTCCCCCAGCACTGAGCGAGTCAGGTTTCTACAGCAGGTACTTCCTCGTTCCCAAAAAGGATGGCGGTCTCAGACCCATCCTCGATCTCAGACATTTGAACAGGGCCCTGACAAAGCGCACATTCAGAATGATCACTTTGAAGCAGATCTTCCCGCAAATACGCCGGGAGACTGGATCTTTACCCTGGATCTGAAAGACGCTTATTATCACATCCAGATAGCCCCCCATCACAGGTGATTCTTGAGATTTGCCTTTGAAGGGGTGGCATATTAATACACGGTTCTTCCATTTCGGCTATCTCTAGCTCCCCGCACTTTTACGAAGTGCATGGATGCGACTCTCTCCCCTCTGAGACAGATGGGTGTGCGCATACTGAACTACCTCAACGACTGGCTCATTTTGGCCCAGTCGGAGGCGGAGCTAATATCTCACAGATCCATCATCCTCAACCACTTGGAGTGCTTGGGGCTCAGGGTCAATTTTCCAAAAGAGCTCGTTATCTCCCAGCCAACGTATCTCGTTCCTGGGGATTATTTTAGACTCAACCCACATGAATAATTTGTATGTGCCCGCTGCAGTTCTAGCTGAAACCATGGGGCCCGTCCCAAGCCTGGCGACATGGTCGTTGCTTGCTCAAGGGTGTGGCAATTGGGACGATGAACAAGAGGAAGGTCGTTGGGGAGCTCTGTGTGACAACCGTCCGGCCTTTGGCACTTGGAACGGCCCGGAAAGCAAGCTTCATATCAACCGTCTGGAAATGATGGTGGTATATCAAGCTCTCCACGCCTTCCTTCCTCTCCTGGTGGGACACCATGTCTTGGTCAGATCGGACAGCATGACGGTGGTGTCCTTCATAAATCACCAGGGCGGGCTCTCTTCAAAGCCCCTCTACACTCTAGAGAAAACCATCCTAGAGTTGGACCAATGCAACCTGCTCTCACTGAGAGCAGCGCATATACAGGGCGTACTGAACACAGGGGCGGACATGTTGTCCCGGAGCAACCTTCCCTCGGAGGAACGGTCGCTCCACCCCCGCACGGTTCAGAAAATTTGGGTCGACCTCTTCGCCTCAGAAGACAATTCTCACTGGCCAATATATTTCTCGAAAGCCAGGGATGCGCTGGACCACGACTGGCCCAGCCTCCCCCTTTATGCTTTTTCCCCGATTGCGCTGATTCCCGAGAGAAGTAAGTCCTGCTTTGGACAGCTTGGTAGAGAACAGGATCCCTCTGTATTTAGTACCTGTGAAACTTGTGGAGAGAATCTTGAGACAGGCTACACTGGGAACTACCCAAATGCAACAAGTACACTTGGCCTATGGTTTGGATAGTGCCATGCCAGTCCATGTAGACCCAAAAGCTGGTGAAATTGGTTTCCGGTTAAACTTTCTAATTTTTGATATTGGGAACATACAACGTGTAGTCCACTCCCCTAACTTTCTCCCATCACTACACACAACATAGACTAATCAGCAGCATGCCCCTGCTAACTTTGCTATGCAGTCCTTTTAGAATCCCCCACTGTGTAGATTAACTCCCTTTTTTTTTTCTTTACTTTAGAGTCATCTTTAGATTACAATTTCTCTAACCTGATATAATTCTTGTTAGTCCTACCATAGGTGGTTAGCACTACCTTTATAGCTATTAAGTCTGTCCTTTAATAACTATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU347231 lncRNA upstream 7927 3682257 ~ 3682623 (+) True G305591
TU347226 lncRNA upstream 11062 3677883 ~ 3679488 (+) False G305589
TU347227 lncRNA upstream 11062 3678359 ~ 3679488 (+) True G305589
TU347224 lncRNA upstream 12779 3676769 ~ 3677771 (+) True G305588
TU347230 lncRNA upstream 16143 3671980 ~ 3674407 (+) True G305590
TU347252 lncRNA downstream 38122 3733350 ~ 3750471 (+) True G305599
TU347248 lncRNA downstream 154253 3849481 ~ 3863135 (+) True G305596
TU347314 lncRNA downstream 170064 3865292 ~ 3865638 (+) True G305655
TU347258 lncRNA downstream 187461 3882689 ~ 3906909 (+) True G305605
TU347323 lncRNA downstream 211762 3906990 ~ 3907365 (+) True G305662
CI01000092_03551674_03573437.mRNA mRNA upstream 117058 3551674 ~ 3573492 (+) True CI01000092_03551674_03573437
CI01000092_03532136_03542761.mRNA mRNA upstream 147667 3532136 ~ 3542883 (+) True CI01000092_03532136_03542761
CI01000092_03478431_03479274.mRNA mRNA upstream 210757 3478431 ~ 3479793 (+) True CI01000092_03478431_03479274
CI01000092_03433283_03442900.mRNA mRNA upstream 247590 3433283 ~ 3442960 (+) True CI01000092_03433283_03442900
CI01000092_03329908_03348045.mRNA mRNA upstream 342231 3329908 ~ 3348319 (+) True CI01000092_03329908_03348045
CI01000092_03725440_03728304.mRNA mRNA downstream 27815 3723043 ~ 3728325 (+) True CI01000092_03725440_03728304
CI01000092_03816152_03827312.mRNA mRNA downstream 120924 3816152 ~ 3827361 (+) True CI01000092_03816152_03827312
CI01000092_03828205_03831437.mRNA mRNA downstream 132977 3828205 ~ 3831775 (+) True CI01000092_03828205_03831437
CI01000092_04205017_04213986.mRNA mRNA downstream 509789 4205017 ~ 4214128 (+) True CI01000092_04205017_04213986
CI01000092_04218446_04223477.mRNA mRNA downstream 523218 4218446 ~ 4224664 (+) True CI01000092_04218446_04223477
TU347218 other upstream 22585 3667308 ~ 3667965 (+) True G305584
TU346472 other upstream 1372316 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 2374027 1315443 ~ 1316523 (+) True G303768
TU347240 other downstream 31119 3726347 ~ 3861333 (+) False G305596

Expression Profile