RNA id: CI01000092_04355642_04374319.mRNA



Basic Information


Item Value
RNA id CI01000092_04355642_04374319.mRNA
length 1119
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000092_04355642_04374319
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4354865 ~ 4374322 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATATATGCAATAAACATAGTTTAGGGTCCAAAGGGATATTCTCTCCAGTCATTTAAGAAATCACATCCAAAGCCTTCTTCCAGAACACCTATAACTCTTTACACTGCCACATACAATGAAACAATGTACCAGTTTCATCATTACATTTTATGCAATTGTCTAGTATGTTAGAATTGATCCTATGCAGTTTAACTGGGGTAATATATGTCCTAAACATCCATTTATATTGTAGTATTCTACATCTAGTATTGATGGATTGAGTTTGAGCTAAGAGGCTAAGAGCAAGAGTGCTCCCATTCCTCCACAGTGATCTCCACCTGGAGATCTCTTTTCCATGCTGATAGGTATGCCTGGGAGCTCTCCTTTGATCCAGACAATAATGTCTTATAAAACATAGAAAGCATTCCTTTATCATTCATATGATTCAGAGTAATTTGTTCTAAAGTAGAGAGTTGAGTTTCTGAATATGTTTTAATTTTGGAATATATGTAACTCCTAATTTGAAGATATGCTTTTGCAGAAGTTTATATTTTGTGACCAACTGTTGGAAGGTCATGATTGTACCTCCTTCATATAAGTTTTTTAACATGCATATTATTCTTCAAATTGGTTAGAAATAAAACAATGTCATCTGTCACATGCTCCCTCTCTCTTCACACCTTTTATATCTGGGCTTATATGTACCCAGCATAACTCTACTATTCGAACTCTTGAAACAAGCTAGTTGCAAAAATTAGCTGAGCAAATTTTTAAATGCACAGAACCTTGTGGCACAATGGTAGCGTGTCTGACTCCAGGTCAGAAGGTTGTGTGTTCAAATAACATCGAGGTCAAATGCTCTCTTCTTTGTGAGCAAGGCTTTTATGAGTCAGGCTCTTATGAGTCTGGAGTCAGACACGCTACCGTTGCGGCACGAGGTCCTGCGCTACCAGATGTGCTACTCTTGCGCCATGAGGTCCTACGCATTTGTGAAGGTGCTGTGAGGAAAAACACGGTGACACAGTCAGCCACGGATGCGGAGGTCACCAAGCACGCAATCAGGTGGTTCAACCTGGCGACGGATCGGGCAGCAAGGAGACATGTCCCACCTCCATCCACACAAACGGAAAAATAAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU347927 lncRNA upstream 41261 4306789 ~ 4313604 (+) True G306205
TU347939 lncRNA upstream 50727 4303787 ~ 4304138 (+) True G306217
TU347912 lncRNA upstream 142815 4211608 ~ 4212050 (+) True G306200
TU347883 lncRNA upstream 193431 4161047 ~ 4161434 (+) True G306173
TU347875 lncRNA upstream 202095 4152491 ~ 4152770 (+) True G306165
TU347962 lncRNA downstream 14502 4388824 ~ 4425428 (+) True G306238
TU347978 lncRNA downstream 22125 4396447 ~ 4396893 (+) True G306252
TU348059 lncRNA downstream 128722 4503044 ~ 4545761 (+) False G306317
TU348057 lncRNA downstream 170645 4544967 ~ 4550487 (+) True G306317
TU348087 lncRNA downstream 199134 4573456 ~ 4578385 (+) True G306342
CI01000092_04335830_04347365.mRNA mRNA upstream 7311 4335830 ~ 4347554 (+) True CI01000092_04335830_04347365
CI01000092_04284298_04291859.mRNA mRNA upstream 63006 4284298 ~ 4291859 (+) True CI01000092_04284298_04291859
CI01000092_04218446_04223477.mRNA mRNA upstream 130201 4218446 ~ 4224664 (+) True CI01000092_04218446_04223477
CI01000092_04205017_04213986.mRNA mRNA upstream 140737 4205017 ~ 4214128 (+) True CI01000092_04205017_04213986
CI01000092_03828205_03831437.mRNA mRNA upstream 523090 3828205 ~ 3831775 (+) True CI01000092_03828205_03831437
CI01000092_04392184_04393522.mRNA mRNA downstream 17512 4391834 ~ 4393942 (+) True CI01000092_04392184_04393522
CI01000092_04458178_04481575.mRNA mRNA downstream 83856 4458178 ~ 4481575 (+) True CI01000092_04458178_04481575
CI01000092_04496416_04505871.mRNA mRNA downstream 122094 4496416 ~ 4505910 (+) True CI01000092_04496416_04505871
CI01000092_04517186_04519261.mRNA mRNA downstream 142864 4517186 ~ 4519585 (+) True CI01000092_04517186_04519261
CI01000092_04529365_04534495.mRNA mRNA downstream 155043 4529365 ~ 4534497 (+) True CI01000092_04529365_04534495
TU347240 other upstream 493532 3726347 ~ 3861333 (+) False G305596
TU347218 other upstream 686900 3667308 ~ 3667965 (+) True G305584
TU346472 other upstream 2036631 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 3038342 1315443 ~ 1316523 (+) True G303768

Expression Profile