RNA id: TCONS_00017548


Basic Information

Item Value
RNA id TCONS_00017548
length 1999
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_008883
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 586605 ~ 604353 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgccgcgaTTACATATCTGCTGTGAGTCGGCTGTAGAAACCAATGCAAGCCTTTCGGCTGGTGTAAGTTCACAACAGATGTAACATCGCGTACCCGTTGCTTAATTTAACATACCAATACTTTATTTATCATTTCTAAACGGTGTTTTGTGCGAGTAAAGAGCATCTACGCGAGGAATAGAAGAGCCGCGTCTCATGTTACTATTTATATCGTCAATCAGTTCATCAGAAACACGAATTCAGTCACTGACAAACAGAGACGAGAGAAACGGAGCTTTTACAGAAACTACAGAAATTCCGAGTCAATTGAATCAAATGATTCAATTGACTCGTTTGAATCACCCCTGTCGACTTCTTCTGGCCAAACAGAGAAAAGAGGAGCGACTGATTTATTTactgttataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgagcaacaaacagATCTGATGCCACtgaaagaggagagtgaagaagtTAATGAAATGAAAGGGGAACCTCAATATGAAAATCAGAATTTcatagctgaaggaaaatatttTAGTTGCTCGAATAATGAAAAGACTTTATCAATAAAAAGAGCTCAAGACACTGGAAGTCAACAATGTGATAAGACTATCAGcaacaaaataaaccatgaaagaTGTGTTAAATCTCGGAAAGGAAAGAAGTCCTACACATGCTCcctgtgtggaaagagttttaaacaTACAGGACACTTTAAAgatcacatgagaattcacactggagaaaaacctttcacttgccaacagtgtggaaaaagcttcagTCGCAAAATAACCCTTCAAAGACATGTTAAAATTCACAACGAAGAGAAGCCGTACATGTgccatcagtgtggaaagagtttcattCAAAAAGGATaccttaaagtccacatgaaagttcacactggagagaaaccctacACTTGCCCACAGTGTGGAAGGGGTTTCATTCAAAAAGGGAACTACagagtgcacatgagaattcactcAGAAGAAAAACAGCACACTTGCCCTCATTGCGGAAAGAGTTTCAACCAGGCAGGACACCTTCGGGACCACAttagaactcacactggagagaaaccctacACATGCCCTctctgtggaaagagtttcattCAAAAAGGGAACTACagagtgcacatgagaattcactcAGAAGAAAAACAGAATACTTGCCCTCAGTGCGGAAAGAGTTTCAATCAGACAGGACACCTTCGAGACCACATTAgaactcacaccggagagaaaccctaCACTTGCGCTCAGTGTGGAAAGGGTTTCAATCAAAAAAGTCACTATACagtccacatgagaattcactcTGAAGAAAAACCCTACAATTGCGCTCAATGTGGAAAGAGCTTCAATCAAAAGGTACATTATAcagcccacatgagaattcactcTGGAGAAAAGCCCtacacatgccctcagtgtggaaagggctttagCTGTAAATTGACCTATAACAGACATATTGGTAGTCACAATGCAGTAAAGACTTAATGTGGGACACACCGTGCAGTTGGACCGTCGATGAGGGTCTGTAGTGCCAGTGTGTTTGGTGTGTTCTAGATGTTGCAAAACACTCTCGTTTCAGTCTGCTGCCATCTCTTTCATGTGTTCATGTGCAGCTTTTCTGTCCAGGTAGGATCAGAAGAGTAAAAGACTCTTGAATTTTGGGACTTGGTCCAACACCTGAGACACTGATATTTGTTATTTTCTCAGGTCAGCAGGTGTGTTAGATGGCTGCCGATCTCTGTCCAAGATGATTTAAAGACTAGAGGCTTTTCTCCAGATGGCCAACAGTTCACAACTTTTCTCCAAGATTGTTTCTAGTTCAGAGAGTTTGTCCAAAATGTTGAATAACCTAGATCAGGGATGTGTAACTTCAGTCTTGGAGAGCca

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-187 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000153884

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019096 lncRNA downstream 150075 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019097 lncRNA downstream 150075 434462 ~ 436530 (-) True XLOC_008875
TCONS_00019095 lncRNA downstream 150162 434096 ~ 436443 (-) False XLOC_008875
TCONS_00018808 lncRNA downstream 156958 428419 ~ 429647 (-) True XLOC_008874
TCONS_00019094 lncRNA downstream 208418 374380 ~ 378187 (-) True XLOC_008871
TCONS_00017552 lncRNA upstream 1286 592594 ~ 595263 (-) False XLOC_008883
TCONS_00017553 lncRNA upstream 9539 600847 ~ 601359 (-) True XLOC_008883
TCONS_00019098 lncRNA upstream 31401 622709 ~ 633408 (-) True XLOC_008885
TCONS_00019099 lncRNA upstream 134108 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 221788 813096 ~ 815019 (-) True XLOC_008893
TCONS_00017547 mRNA downstream 10470 572195 ~ 576135 (-) True XLOC_008882
TCONS_00017545 mRNA downstream 17960 556956 ~ 568645 (-) False XLOC_008881
TCONS_00017546 mRNA downstream 22728 557084 ~ 563877 (-) True XLOC_008881
TCONS_00017544 mRNA downstream 35424 543746 ~ 551181 (-) True XLOC_008880
TCONS_00017543 mRNA downstream 35428 543744 ~ 551177 (-) False XLOC_008880
TCONS_00017551 mRNA upstream 945 592253 ~ 604353 (-) False XLOC_008883
TCONS_00017554 mRNA upstream 19921 611229 ~ 617797 (-) True XLOC_008884
TCONS_00017555 mRNA upstream 56546 647854 ~ 651602 (-) False XLOC_008886
TCONS_00017556 mRNA upstream 58429 649737 ~ 660394 (-) False XLOC_008886
TCONS_00017557 mRNA upstream 64761 656069 ~ 660289 (-) True XLOC_008886
TCONS_00017537 other downstream 160849 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 237038 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 730482 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1243663 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1674661 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 2033720 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2145075 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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