RNA id: TU344968



Basic Information


Item Value
RNA id TU344968
length 495
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G303621
representative False

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 858236 ~ 863315 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCCGAGTGTTGTGGGAGCTGAACGAGGCCACTGGAGCGATTGCGCAACACACGCCTCACGAGCAGCTGAACTTTTATTACGCCACAGTCGCCGGCACCGCTTCCGCTTTTCCGGTCATGAGTATGAGGTAACGCAGCTCTGTTTATCATATTAGATACATTTGAGTGTGTTGAAAATGATGTTATAACGTTACTCTGTGCGTTCGCTTGGTGGCTGCTGTGAGACACTTGTTTGAGACAAACTGAAGTGAGGACACGTTCGAGCTGCATGCGGTGCAGTTGGAGCTGGAGGCCGTGGAACGACAGATCCGGACCCTTCTGGAGAAGCAGGCCGAGCTACGGGAGCGGCGAACAGCGCTGGAAACATCCCGTGCTGACGCTCACCAATCCTCGGTAAGTTTGCAGCGCGATATTAACATTCCTGCTTCCTCTACGCCGTGTGCTTCTCTGCACAGGGCCCGAGAACCCAGAACGCGTTCATCCCAGCCCTCGTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU344967 lncRNA upstream 923 857076 ~ 857313 (+) True G303620
TU344965 lncRNA upstream 2788 855152 ~ 855448 (+) True G303618
TU344828 lncRNA upstream 209616 627751 ~ 648620 (+) True G303496
TU344879 lncRNA upstream 280784 576684 ~ 577452 (+) True G303542
TU344878 lncRNA upstream 284980 572541 ~ 573256 (+) True CI01000092_00566301_00571771
TU344934 lncRNA downstream 26471 889786 ~ 890047 (+) True CI01000092_00887219_00908525
TU344939 lncRNA downstream 46622 909937 ~ 910307 (+) True G303592
TU344984 lncRNA downstream 98493 961808 ~ 962023 (+) True G303631
TU345012 lncRNA downstream 199839 1063154 ~ 1063471 (+) True G303659
TU345020 lncRNA downstream 208094 1071409 ~ 1071679 (+) True G303667
CI01000092_00779993_00785442.mRNA mRNA upstream 72794 779932 ~ 785442 (+) True CI01000092_00779993_00785442
CI01000092_00759626_00765910.mRNA mRNA upstream 91857 759626 ~ 766379 (+) True CI01000092_00759626_00765910
CI01000092_00658637_00661404.mRNA mRNA upstream 196832 658637 ~ 661404 (+) True CI01000092_00658637_00661404
CI01000092_00566301_00571771.mRNA mRNA upstream 285624 566165 ~ 572612 (+) False CI01000092_00566301_00571771
CI01000092_00433410_00477493.mRNA mRNA upstream 380730 432638 ~ 477506 (+) False CI01000092_00433410_00477493
CI01000092_00868568_00868858.mRNA mRNA downstream 4715 868030 ~ 869072 (+) True CI01000092_00868568_00868858
CI01000092_00869289_00871464.mRNA mRNA downstream 5859 869174 ~ 871841 (+) True CI01000092_00869289_00871464
CI01000092_00887219_00908525.mRNA mRNA downstream 23904 887219 ~ 908525 (+) False CI01000092_00887219_00908525
CI01000092_00964013_00967452.mRNA mRNA downstream 100572 963887 ~ 967475 (+) False CI01000092_00964013_00967452
CI01000092_01034513_01049419.mRNA mRNA downstream 171198 1034513 ~ 1049419 (+) True CI01000092_01034513_01049419
TU345140 other downstream 452128 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 1454477 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 2803993 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 2863032 3726347 ~ 3861333 (+) False G305596

Expression Profile