RNA id: TU345219


Basic Information

Item Value
RNA id TU345219
length 331
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G303824
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1294213 ~ 1294543 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCAACTAGGGAATAGACAGCAATGTTTATGGGCCCTATTTTAACGATCTAAGCGCATGGCGCAGGTGCACTTAGGGCGTGTCCGAATCCACTTTTGCTAGTTTAACAACGGGAAAAATGGTCAGTGAACCCGGTGCATGGTCTAAAAGGGTTGTACCTATAGGTTACGAAGAAAGTGTAAACTGGCATCGCGTCAGTTAAGCTTTTTCCGTAAGTTGAATAGGGAAGGCATAGGACGTAGCATAATCTTCGTGAACTGCAAGAGTTTTACACTTTCTTCATACATAATCCTTTAATGATAATGGGTGTGTTTTGGGAGTAACGTGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345216 lncRNA upstream 4442 1289434 ~ 1289771 (+) True G303821
TU345208 lncRNA upstream 16927 1276968 ~ 1277286 (+) True G303813
TU345202 lncRNA upstream 21046 1272700 ~ 1273167 (+) False G303809
TU345201 lncRNA upstream 21046 1272782 ~ 1273167 (+) True G303809
TU345146 lncRNA upstream 81463 1212058 ~ 1212750 (+) False G303772
TU345228 lncRNA downstream 24466 1319009 ~ 1322900 (+) True G303833
TU345177 lncRNA downstream 61654 1356197 ~ 1384944 (+) True G303798
TU345289 lncRNA downstream 132025 1426568 ~ 1426788 (+) True G303892
TU345296 lncRNA downstream 155499 1450042 ~ 1450247 (+) True G303899
TU345257 lncRNA downstream 163923 1458466 ~ 1485919 (+) True G303860
CI01000092_01163367_01169844.mRNA mRNA upstream 123444 1163308 ~ 1170769 (+) True CI01000092_01163367_01169844
CI01000092_01050305_01051867.mRNA mRNA upstream 241753 1050305 ~ 1052460 (+) True CI01000092_01050305_01051867
CI01000092_01034513_01049419.mRNA mRNA upstream 244794 1034513 ~ 1049419 (+) True CI01000092_01034513_01049419
CI01000092_00964013_00967452.mRNA mRNA upstream 326738 963887 ~ 967475 (+) False CI01000092_00964013_00967452
CI01000092_00887219_00908525.mRNA mRNA upstream 385688 887219 ~ 908525 (+) False CI01000092_00887219_00908525
CI01000092_01625114_01626286.mRNA mRNA downstream 330064 1624607 ~ 1626717 (+) True CI01000092_01625114_01626286
CI01000092_01871020_01880095.mRNA mRNA downstream 576477 1871020 ~ 1882078 (+) True CI01000092_01871020_01880095
CI01000092_01889654_01894899.mRNA mRNA downstream 595111 1889654 ~ 1895088 (+) True CI01000092_01889654_01894899
CI01000092_01912280_01944807.mRNA mRNA downstream 617737 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_01962495_01963651.mRNA mRNA downstream 667952 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
TU345140 other downstream 20900 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 1023249 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 2372765 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 2431804 3726347 ~ 3861333 (+) False G305596

Expression Profile