RNA id: TU345228


Basic Information

Item Value
RNA id TU345228
length 371
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G303833
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1319009 ~ 1322900 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCTTTCTCATCCCTGAGGCCTCGATATCTGCATGACGTTTGGCTTTGGGTTAAGTTCACATTGGCAACAGCGAGGGTGAAGTTGATGTATCCACTCATGCTGCCCGCAGTGTAGCGGTAAAAGAGTCGTGGCAGGAAATCAGACGTGAAGGCAATCAGGAAAGCATTACTGATGACAGCCAGGAAGGAGATGAACTTTAGGATGGTCAGCCAGATGCCAATGTCTTGTGCTCTTTCCACAACAGGCCTGCGATACTCACACACAAACTTCTGGGCATCGAGACGCACCTCCACCCAGTTATTTATCAAGGCAAACAATGGAGCCAAAGGACAGGCTGCTACAAAGATGGTGATGAAGCCAAACTGCAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345219 lncRNA upstream 24466 1294213 ~ 1294543 (+) True G303824
TU345216 lncRNA upstream 29238 1289434 ~ 1289771 (+) True G303821
TU345208 lncRNA upstream 41723 1276968 ~ 1277286 (+) True G303813
TU345202 lncRNA upstream 45842 1272700 ~ 1273167 (+) False G303809
TU345201 lncRNA upstream 45842 1272782 ~ 1273167 (+) True G303809
TU345177 lncRNA downstream 33297 1356197 ~ 1384944 (+) True G303798
TU345289 lncRNA downstream 103668 1426568 ~ 1426788 (+) True G303892
TU345296 lncRNA downstream 127142 1450042 ~ 1450247 (+) True G303899
TU345257 lncRNA downstream 135566 1458466 ~ 1485919 (+) True G303860
TU345328 lncRNA downstream 232774 1555674 ~ 1555874 (+) True G303930
CI01000092_01163367_01169844.mRNA mRNA upstream 148240 1163308 ~ 1170769 (+) True CI01000092_01163367_01169844
CI01000092_01050305_01051867.mRNA mRNA upstream 266549 1050305 ~ 1052460 (+) True CI01000092_01050305_01051867
CI01000092_01034513_01049419.mRNA mRNA upstream 269590 1034513 ~ 1049419 (+) True CI01000092_01034513_01049419
CI01000092_00964013_00967452.mRNA mRNA upstream 351534 963887 ~ 967475 (+) False CI01000092_00964013_00967452
CI01000092_00887219_00908525.mRNA mRNA upstream 410484 887219 ~ 908525 (+) False CI01000092_00887219_00908525
CI01000092_01625114_01626286.mRNA mRNA downstream 301707 1624607 ~ 1626717 (+) True CI01000092_01625114_01626286
CI01000092_01871020_01880095.mRNA mRNA downstream 548120 1871020 ~ 1882078 (+) True CI01000092_01871020_01880095
CI01000092_01889654_01894899.mRNA mRNA downstream 566754 1889654 ~ 1895088 (+) True CI01000092_01889654_01894899
CI01000092_01912280_01944807.mRNA mRNA downstream 589380 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_01962495_01963651.mRNA mRNA downstream 639595 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
TU345140 other upstream 2486 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 994892 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 2344408 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 2403447 3726347 ~ 3861333 (+) False G305596

Expression Profile