Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU345257 |
| length | 967 |
| lncRNA type | antisense_over |
| GC content | 0.46 |
| exon number | 4 |
| gene id | G303860 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 1458466 ~ 1485919 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU345296 | lncRNA | upstream | 8219 | 1450042 ~ 1450247 (+) | True | G303899 |
| TU345289 | lncRNA | upstream | 31678 | 1426568 ~ 1426788 (+) | True | G303892 |
| TU345177 | lncRNA | upstream | 73522 | 1356197 ~ 1384944 (+) | True | G303798 |
| TU345228 | lncRNA | upstream | 135566 | 1319009 ~ 1322900 (+) | True | G303833 |
| TU345219 | lncRNA | upstream | 163923 | 1294213 ~ 1294543 (+) | True | G303824 |
| TU345328 | lncRNA | downstream | 69755 | 1555674 ~ 1555874 (+) | True | G303930 |
| TU345260 | lncRNA | downstream | 72227 | 1558146 ~ 1562538 (+) | True | G303863 |
| TU345261 | lncRNA | downstream | 89178 | 1575097 ~ 1585956 (+) | True | G303864 |
| TU345351 | lncRNA | downstream | 101367 | 1587286 ~ 1587761 (+) | True | G303952 |
| TU345359 | lncRNA | downstream | 124239 | 1610158 ~ 1610843 (+) | True | G303960 |
| CI01000092_01163367_01169844.mRNA | mRNA | upstream | 287697 | 1163308 ~ 1170769 (+) | True | CI01000092_01163367_01169844 |
| CI01000092_01050305_01051867.mRNA | mRNA | upstream | 406006 | 1050305 ~ 1052460 (+) | True | CI01000092_01050305_01051867 |
| CI01000092_01034513_01049419.mRNA | mRNA | upstream | 409047 | 1034513 ~ 1049419 (+) | True | CI01000092_01034513_01049419 |
| CI01000092_00964013_00967452.mRNA | mRNA | upstream | 490991 | 963887 ~ 967475 (+) | False | CI01000092_00964013_00967452 |
| CI01000092_00887219_00908525.mRNA | mRNA | upstream | 549941 | 887219 ~ 908525 (+) | False | CI01000092_00887219_00908525 |
| CI01000092_01625114_01626286.mRNA | mRNA | downstream | 138688 | 1624607 ~ 1626717 (+) | True | CI01000092_01625114_01626286 |
| CI01000092_01871020_01880095.mRNA | mRNA | downstream | 385101 | 1871020 ~ 1882078 (+) | True | CI01000092_01871020_01880095 |
| CI01000092_01889654_01894899.mRNA | mRNA | downstream | 403735 | 1889654 ~ 1895088 (+) | True | CI01000092_01889654_01894899 |
| CI01000092_01912280_01944807.mRNA | mRNA | downstream | 426361 | 1912280 ~ 1945217 (+) | True | CI01000092_01912280_01944807 |
| CI01000092_01962495_01963651.mRNA | mRNA | downstream | 476576 | 1962495 ~ 1963887 (+) | True | CI01000092_01962495_01963651 |
| TU345140 | other | upstream | 141943 | 1315443 ~ 1316523 (+) | True | G303768 |
| TU346472 | other | downstream | 831873 | 2317792 ~ 2318234 (+) | True | G304938 |
| TU347218 | other | downstream | 2181389 | 3667308 ~ 3667965 (+) | True | G305584 |
| TU347240 | other | downstream | 2240428 | 3726347 ~ 3861333 (+) | False | G305596 |
