RNA id: TU346159



Basic Information


Item Value
RNA id TU346159
length 230
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G304662
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1866080 ~ 1866309 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGCTTTTTCACATCTCTCGATCTAATAGACAAAATAAGCTCACGGAATTTACATATGAACACGCATAGCGTCGACGGAAAAACATACAGAGAGCAGCAGCTTTCATTTCTGCTTTGACAGCCACAAGACCGGCCGAACGCTGAGTGTCTGTTAAAAATCAGGAATAGTGAGGGAACATTGTGCTCGGTATGTTTTTCGCCTTCAAGCCAAAATTAGGTCTTCAGCAGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346158 lncRNA upstream 176 1865503 ~ 1865904 (+) True G304661
TU346157 lncRNA upstream 735 1865036 ~ 1865345 (+) True G304660
TU346156 lncRNA upstream 1662 1864130 ~ 1864418 (+) True G304659
TU346147 lncRNA upstream 22452 1843206 ~ 1843628 (+) True G304650
TU346078 lncRNA upstream 127763 1737950 ~ 1738317 (+) True G304583
TU346132 lncRNA downstream 32867 1899176 ~ 1899473 (+) True G304635
TU346171 lncRNA downstream 86789 1953098 ~ 1953827 (+) True G304671
TU346175 lncRNA downstream 92946 1959255 ~ 1959531 (+) True G304672
TU346130 lncRNA downstream 138985 2005294 ~ 2035925 (+) True G304633
TU346195 lncRNA downstream 175219 2041528 ~ 2041832 (+) True G304687
CI01000092_01625114_01626286.mRNA mRNA upstream 239363 1624607 ~ 1626717 (+) True CI01000092_01625114_01626286
CI01000092_01163367_01169844.mRNA mRNA upstream 695311 1163308 ~ 1170769 (+) True CI01000092_01163367_01169844
CI01000092_01050305_01051867.mRNA mRNA upstream 813620 1050305 ~ 1052460 (+) True CI01000092_01050305_01051867
CI01000092_01034513_01049419.mRNA mRNA upstream 816661 1034513 ~ 1049419 (+) True CI01000092_01034513_01049419
CI01000092_00964013_00967452.mRNA mRNA upstream 898605 963887 ~ 967475 (+) False CI01000092_00964013_00967452
CI01000092_01871020_01880095.mRNA mRNA downstream 4711 1871020 ~ 1882078 (+) True CI01000092_01871020_01880095
CI01000092_01889654_01894899.mRNA mRNA downstream 23345 1889654 ~ 1895088 (+) True CI01000092_01889654_01894899
CI01000092_01912280_01944807.mRNA mRNA downstream 45971 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_01962495_01963651.mRNA mRNA downstream 96186 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
CI01000092_01985290_01986640.mRNA mRNA downstream 118981 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
TU345140 other upstream 549557 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 451483 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 1800999 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1860038 3726347 ~ 3861333 (+) False G305596

Expression Profile