RNA id: TU346202


Basic Information

Item Value
RNA id TU346202
length 224
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G304694
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2054489 ~ 2054712 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACTATAAAAACAAATAACACAGAACTACATTATCAGTGGAAAAAAAATAAAGATAGCCTCATAGTTATAGTTTCTAGTTTCCATTTTTTCATAAAACAAAATTGTAGTAGTAGATTTTTATTTTTTTCCCCCTAAAACTAATCAGAGGATTAAAAATAAGCATACGTAGTCTACCAAATTCTTTCATTCAAAAGACTACACTCTTGTTGCTTAAAGTTCGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346198 lncRNA upstream 7865 2046381 ~ 2046624 (+) True G304690
TU346195 lncRNA upstream 12657 2041528 ~ 2041832 (+) True G304687
TU346130 lncRNA upstream 18564 2005294 ~ 2035925 (+) True G304633
TU346175 lncRNA upstream 94958 1959255 ~ 1959531 (+) True G304672
TU346171 lncRNA upstream 100662 1953098 ~ 1953827 (+) True G304671
TU346208 lncRNA downstream 19619 2074331 ~ 2074605 (+) True G304700
TU346194 lncRNA downstream 24735 2079447 ~ 2079740 (+) True G304686
TU346336 lncRNA downstream 41928 2096640 ~ 2096939 (+) True G304816
TU346348 lncRNA downstream 94802 2149514 ~ 2151387 (+) True G304828
TU346422 lncRNA downstream 167693 2222405 ~ 2222761 (+) True G304889
CI01000092_01989763_02003920.mRNA mRNA upstream 50359 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 67802 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_01962495_01963651.mRNA mRNA upstream 90602 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
CI01000092_01912280_01944807.mRNA mRNA upstream 109272 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_01889654_01894899.mRNA mRNA upstream 159401 1889654 ~ 1895088 (+) True CI01000092_01889654_01894899
CI01000092_02186791_02187942.mRNA mRNA downstream 132079 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_02279826_02285934.mRNA mRNA downstream 221800 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02358901_02363225.mRNA mRNA downstream 303191 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02395791_02407508.mRNA mRNA downstream 340889 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02411552_02412283.mRNA mRNA downstream 356840 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
TU345140 other upstream 737966 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 263080 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 1612596 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1671635 3726347 ~ 3861333 (+) False G305596

Expression Profile