RNA id: TU346194



Basic Information


Item Value
RNA id TU346194
length 241
lncRNA type intronic
GC content 0.44
exon number 2
gene id G304686
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2079447 ~ 2079740 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCAATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACAGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346208 lncRNA upstream 4842 2074331 ~ 2074605 (+) True G304700
TU346202 lncRNA upstream 24735 2054489 ~ 2054712 (+) True G304694
TU346198 lncRNA upstream 32823 2046381 ~ 2046624 (+) True G304690
TU346195 lncRNA upstream 37615 2041528 ~ 2041832 (+) True G304687
TU346130 lncRNA upstream 43522 2005294 ~ 2035925 (+) True G304633
TU346336 lncRNA downstream 16900 2096640 ~ 2096939 (+) True G304816
TU346348 lncRNA downstream 69774 2149514 ~ 2151387 (+) True G304828
TU346422 lncRNA downstream 142665 2222405 ~ 2222761 (+) True G304889
TU346427 lncRNA downstream 152896 2232636 ~ 2232915 (+) True G304894
TU346430 lncRNA downstream 158997 2238737 ~ 2239186 (+) True G304897
CI01000092_01989763_02003920.mRNA mRNA upstream 75317 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 92760 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_01962495_01963651.mRNA mRNA upstream 115560 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
CI01000092_01912280_01944807.mRNA mRNA upstream 134230 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_01889654_01894899.mRNA mRNA upstream 184359 1889654 ~ 1895088 (+) True CI01000092_01889654_01894899
CI01000092_02186791_02187942.mRNA mRNA downstream 107051 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_02279826_02285934.mRNA mRNA downstream 196772 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02358901_02363225.mRNA mRNA downstream 278163 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02395791_02407508.mRNA mRNA downstream 315861 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02411552_02412283.mRNA mRNA downstream 331812 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
TU345140 other upstream 762924 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 238052 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 1587568 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1646607 3726347 ~ 3861333 (+) False G305596

Expression Profile