RNA id: TU346336


Basic Information

Item Value
RNA id TU346336
length 300
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G304816
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2096640 ~ 2096939 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCTACCAAGCCAATTTCAGCAGTTCTAACTGATATGCTTACAAACAGACATTGTGTGTAAGCAACACCCGCCCGACCTGCTGCCGCGTATAGAGCGTTGGAGCCTACCTATATCACGAGATAGTTGCACTCATCTCGTCAGTAGGAGGAGTCGACGCGTACCCATACTCACTCCATCAACATCAGCGAATTAACCTGCTGATGTTGATGAATGCGAGCTGAATACAGGTCCTTCCATGCCTTCTCGATCTCAGTAAGAAGATCAAGAAGGAATGGAAAGCTTACGGTGGCTGGAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346194 lncRNA upstream 16900 2079447 ~ 2079740 (+) True G304686
TU346208 lncRNA upstream 22035 2074331 ~ 2074605 (+) True G304700
TU346202 lncRNA upstream 41928 2054489 ~ 2054712 (+) True G304694
TU346198 lncRNA upstream 50016 2046381 ~ 2046624 (+) True G304690
TU346195 lncRNA upstream 54808 2041528 ~ 2041832 (+) True G304687
TU346348 lncRNA downstream 52575 2149514 ~ 2151387 (+) True G304828
TU346422 lncRNA downstream 125466 2222405 ~ 2222761 (+) True G304889
TU346427 lncRNA downstream 135697 2232636 ~ 2232915 (+) True G304894
TU346430 lncRNA downstream 141798 2238737 ~ 2239186 (+) True G304897
TU346434 lncRNA downstream 147133 2244072 ~ 2244277 (+) True G304901
CI01000092_01989763_02003920.mRNA mRNA upstream 92510 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 109953 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_01962495_01963651.mRNA mRNA upstream 132753 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
CI01000092_01912280_01944807.mRNA mRNA upstream 151423 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_01889654_01894899.mRNA mRNA upstream 201552 1889654 ~ 1895088 (+) True CI01000092_01889654_01894899
CI01000092_02186791_02187942.mRNA mRNA downstream 89852 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_02279826_02285934.mRNA mRNA downstream 179573 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02358901_02363225.mRNA mRNA downstream 260964 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02395791_02407508.mRNA mRNA downstream 298662 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02411552_02412283.mRNA mRNA downstream 314613 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
TU345140 other upstream 780117 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 220853 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 1570369 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1629408 3726347 ~ 3861333 (+) False G305596

Expression Profile