Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU346348 |
| length | 1111 |
| lncRNA type | intronic |
| GC content | 0.33 |
| exon number | 2 |
| gene id | G304828 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 2149514 ~ 2151387 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU346336 | lncRNA | upstream | 52575 | 2096640 ~ 2096939 (+) | True | G304816 |
| TU346194 | lncRNA | upstream | 69774 | 2079447 ~ 2079740 (+) | True | G304686 |
| TU346208 | lncRNA | upstream | 74909 | 2074331 ~ 2074605 (+) | True | G304700 |
| TU346202 | lncRNA | upstream | 94802 | 2054489 ~ 2054712 (+) | True | G304694 |
| TU346198 | lncRNA | upstream | 102890 | 2046381 ~ 2046624 (+) | True | G304690 |
| TU346422 | lncRNA | downstream | 71018 | 2222405 ~ 2222761 (+) | True | G304889 |
| TU346427 | lncRNA | downstream | 81249 | 2232636 ~ 2232915 (+) | True | G304894 |
| TU346430 | lncRNA | downstream | 87350 | 2238737 ~ 2239186 (+) | True | G304897 |
| TU346434 | lncRNA | downstream | 92685 | 2244072 ~ 2244277 (+) | True | G304901 |
| TU346439 | lncRNA | downstream | 105979 | 2257366 ~ 2257650 (+) | True | G304906 |
| CI01000092_01989763_02003920.mRNA | mRNA | upstream | 145384 | 1989763 ~ 2004130 (+) | True | CI01000092_01989763_02003920 |
| CI01000092_01985290_01986640.mRNA | mRNA | upstream | 162827 | 1985290 ~ 1986687 (+) | True | CI01000092_01985290_01986640 |
| CI01000092_01962495_01963651.mRNA | mRNA | upstream | 185627 | 1962495 ~ 1963887 (+) | True | CI01000092_01962495_01963651 |
| CI01000092_01912280_01944807.mRNA | mRNA | upstream | 204297 | 1912280 ~ 1945217 (+) | True | CI01000092_01912280_01944807 |
| CI01000092_01889654_01894899.mRNA | mRNA | upstream | 254426 | 1889654 ~ 1895088 (+) | True | CI01000092_01889654_01894899 |
| CI01000092_02186791_02187942.mRNA | mRNA | downstream | 35404 | 2186791 ~ 2187942 (+) | True | CI01000092_02186791_02187942 |
| CI01000092_02279826_02285934.mRNA | mRNA | downstream | 125125 | 2276512 ~ 2286079 (+) | True | CI01000092_02279826_02285934 |
| CI01000092_02358901_02363225.mRNA | mRNA | downstream | 206516 | 2357903 ~ 2364462 (+) | True | CI01000092_02358901_02363225 |
| CI01000092_02395791_02407508.mRNA | mRNA | downstream | 244214 | 2395601 ~ 2407511 (+) | False | CI01000092_02395791_02407508 |
| CI01000092_02411552_02412283.mRNA | mRNA | downstream | 260165 | 2411552 ~ 2412783 (+) | False | CI01000092_02411552_02412283 |
| TU345140 | other | upstream | 832991 | 1315443 ~ 1316523 (+) | True | G303768 |
| TU346472 | other | downstream | 166405 | 2317792 ~ 2318234 (+) | True | G304938 |
| TU347218 | other | downstream | 1515921 | 3667308 ~ 3667965 (+) | True | G305584 |
| TU347240 | other | downstream | 1574960 | 3726347 ~ 3861333 (+) | False | G305596 |
