RNA id: TU346440


Basic Information

Item Value
RNA id TU346440
length 415
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G304907
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2258273 ~ 2258687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACCAAGATTCCTGACTTGATTTTTAGTTGTTTGACCCCTAGAGTGAAGGTATACGTTCACTTTGAGAACTTCATCTTTGTTTCCAAACGCAATGACTTCAGTTTTGTCTTTGTTTAACTGAAGGAAGTTTTGGCACATCCAATTTTTAATTTCATCAATGCATTGGCACAGGGAGTCAATGGGACTGTAGTCGTTAGGTGATAGGGCTAGGTAAATCTGGGTGTCATCTGCATAGCTGTGATATGCAATTTGGCTCATTCTCATTATTTGGCTTAGTGGCAGCATATATAGGTTGAACAGGAGGGGTGCAAGTATTGAACCTTGAGGGACTCCACATGTCATGGATGCCCACTCAGACTTATGGTCACCGATACTCACATAATAACCTCTCCCTTCTAAGTATGACCTGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346439 lncRNA upstream 623 2257366 ~ 2257650 (+) True G304906
TU346434 lncRNA upstream 13996 2244072 ~ 2244277 (+) True G304901
TU346430 lncRNA upstream 19087 2238737 ~ 2239186 (+) True G304897
TU346427 lncRNA upstream 25358 2232636 ~ 2232915 (+) True G304894
TU346422 lncRNA upstream 35512 2222405 ~ 2222761 (+) True G304889
TU346464 lncRNA downstream 41607 2300294 ~ 2300519 (+) True G304930
TU346468 lncRNA downstream 52712 2311399 ~ 2311641 (+) True G304934
TU346490 lncRNA downstream 92033 2350720 ~ 2350923 (+) True G304955
TU346498 lncRNA downstream 122571 2381258 ~ 2381543 (+) True G304963
TU346501 lncRNA downstream 135443 2394130 ~ 2394368 (+) True G304966
CI01000092_02186791_02187942.mRNA mRNA upstream 70331 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_01989763_02003920.mRNA mRNA upstream 254143 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 271586 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_01962495_01963651.mRNA mRNA upstream 294386 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
CI01000092_01912280_01944807.mRNA mRNA upstream 313056 1912280 ~ 1945217 (+) True CI01000092_01912280_01944807
CI01000092_02279826_02285934.mRNA mRNA downstream 17825 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02358901_02363225.mRNA mRNA downstream 99216 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02395791_02407508.mRNA mRNA downstream 136914 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02411552_02412283.mRNA mRNA downstream 152865 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02418597_02419541.mRNA mRNA downstream 159721 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
TU345140 other upstream 941750 1315443 ~ 1316523 (+) True G303768
TU346472 other downstream 59105 2317792 ~ 2318234 (+) True G304938
TU347218 other downstream 1408621 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1467660 3726347 ~ 3861333 (+) False G305596

Expression Profile