RNA id: TCONS_00017568


Basic Information

Item Value
RNA id TCONS_00017568
length 2870
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_008890
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 722475 ~ 1003553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGACGTCATCACGCCGTGCCGCGTTCCATTTCTGTTGTGAATCTACTCGAGAAAGAACAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagAAGATCTTATGCCACTCAAAAAGGAGAGTCAAGACCAGAATGAGATTGAAGAGGAGGATCAACATGAGAAAATATCTGAAGAAGAACCAGAACAGACAAAAACCTCCTCAGACAGAACAGCACAGATGACCGAATCTAACACCTGCcatgagtgtggaaagagtttcactagGAAACAATCCTTTACaaaccacatgagaattcacactggagaaaagccttacgcttgccaacagtgtggaaagagtttcacttcTAGACAATATCATAAAAACCACATGAaggttcacactggagaaaagccctaCACCTGCCAACACTGTGGAAAAAGTTTCACTCGTAAAGAATCCTTTACaaaccacatgagaattcacGCTGGAGAAAAGCCTTACACCTGCCTGTACTGTGAAAAGAGCTTCACTTGTAAACTAAACCTTAAAAACCACATGATCGTACACACTGGAGCAAAACCTCACACATgccatcagtgtggaaagagtttcacttgGAAACAATACCTTGCCGagcacatgaggattcacactggagaaaagcctcaCAGTTGtcaacaatgtggaaaaagtttcACTTGGAAACAATCCTATAAAAGTCATATGAGAAATCACACTAAAGAAAGGCCTTACGTTTGCcaacagtgtgggaagagtttcacttggaaacaaaaccttaaaaaacacatgaatgttcacactggagaaaagctgTACAGCTGTCAAtactgtggaaagagtttcacttgGAAGCAAAGCCTTACAGACCATTTGAAGATCCACTCTGGAGTAAAGCCGCACagttgccctcagtgtggaaagagcttcacttGGAAACAAAACCTTATTGAGCATATGAAGGTTCACAGTCGAGAGTCTGCTAAGGGGACAGAGTTTCAGATATAAACCACTTTTTGATTCCCACGTGATGCTTCATAATAGACAAAAGCCTGAAATTGGAAGGAGAAAGTAAATCAGTGATTAGTGTTGAGTTTCATATACAGGAATCATGTAGTAACTCACACCAGAGGAAAGTCCTAAAATCGTTCACATGTGAGCCCCAAACCCAGGCCTGGCTCCAGGGTGATTGTCCCGTTTGAGCCATATTGGTCCTCAATTTTGTTGTACTCATAAGAGGGGTTTGAACCACACTTAGACCTGTTAACTAGGACCACTTTGGCTTGGGAGACAATAGCAGAGGCGTTTAATCCCAGACAACACCGCTTCTAACATCATTCAGGCACTAAAACCCCTACAACACGATAAGGTGCCATTTCAAGGAGAGGTAGCGCTGAATTAATCTACTGATCTAGAGTTTTCTGTCAGAAAAAAGAGACGGGCATACATGGAGAAACTGCCACCTGTAGAAAACTCTCAGTAGACAATTCCAGAAACATTTGTAATGTGTTATGCAGCTTCATGAAGACATTGTGCATCATAGACGTCACATGATTATTGATTGTgtgggctcaggactactgcgACAAACTTTTGTCAAATCCACAGTTTGTAGTTACATCTACACATGCCATTGAAAACTGTACCGTGCCAAAAgcaagccctatgttaacagtgatTAAAAGCACCGTCGACTTCTCTGAGTTTTGGCCTCTGTCACTTGTGTGATATATCGTTTattcaacagtttgacggcataattgtgtattcaaaaaaagaaaataaaactagAGTCTataaacccttttgtatgaggaactattttcttcgcctgttcattcacatctgcagctgaggtcagaacagcagaaaacagcagaaagtgtttgaatgattctctagcgtaatgtctagaGTAATGAATAATCAGCTGATCTGGCTCACATTATAAGATTAtagggctgaacagcatgaaatgccatcagtctacagatttcccagcatttctctgttgtaatcggagtgtcacaataattaaccccgaaaaagccaaagcaaacactagcagattactgttgtgCTTGCGATAAGGAAAAGTGCTAAACACATGCGTGCGTTTCTTCTGTCTGTTTACTGAACTATTCTGCAGTAACGAAACCCTTcctcttacccctacccctcgttttgcacatTCACGTCAAGGaataggggtgtcccaattctctttagcttgaaagcGTAGGGCTAAGGGTAAAAGGTAAATACCACTCTgtatgaagatttttcaggaccacactcgaaaccaagtggtaagaaaatttcccagaatacaccagccacaatgaCAGAATCTCTGCACCCGGATGTAAGGAGAtcccaatattattattttttggtcatTAATACAAATtcttacaacaaacaagcacatgttttaatatattcattaccATGATCTTGTTTTACCTTCATGCTtgaaaataaatgctaaaataaaaacctctaaatttgccgatctataatccctaacaATACCTTGAGTGACAGTCGAATACAGTGTTGCCAGGTGTAtgataattatcatatttgtaCGATAATTTCGAAATCTGTACGATGTACGATCAATAATGAGAAAAATCCTATAATGTAcgataatttcagaattttatggcatttaaaagtaatttcattGTAATCTTCGGGCTTCTTTCTTTATTGATCTAGCTGCATCTTTTCTGTACTGTCTGTGAGGAGTAGGTGGAGTTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157492

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019098 lncRNA downstream 89067 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 121116 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 127212 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019096 lncRNA downstream 285945 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019100 lncRNA upstream 50774 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019101 lncRNA upstream 55869 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019102 lncRNA upstream 74693 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019103 lncRNA upstream 107639 869961 ~ 909037 (-) True XLOC_008896
TCONS_00019104 lncRNA upstream 113006 875328 ~ 875985 (-) True XLOC_008897
TCONS_00017563 mRNA downstream 18010 685007 ~ 704465 (-) False XLOC_008889
TCONS_00017565 mRNA downstream 18056 699742 ~ 704419 (-) False XLOC_008889
TCONS_00017566 mRNA downstream 18067 700397 ~ 704408 (-) True XLOC_008889
TCONS_00017564 mRNA downstream 27311 694653 ~ 695164 (-) False XLOC_008889
TCONS_00017561 mRNA downstream 37564 673737 ~ 684911 (-) False XLOC_008888
TCONS_00017579 mRNA upstream 3438 765760 ~ 780499 (-) False XLOC_008890
TCONS_00017580 mRNA upstream 151476 913798 ~ 917274 (-) False XLOC_008890
TCONS_00017581 mRNA upstream 157976 920298 ~ 923981 (-) True XLOC_008900
TCONS_00017582 mRNA upstream 162878 925200 ~ 931848 (-) False XLOC_008890
TCONS_00017583 mRNA upstream 164203 926525 ~ 931815 (-) False XLOC_008890
TCONS_00017537 other downstream 296719 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 372908 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 559468 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1072649 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1503647 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1862706 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1974061 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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