RNA id: TU346472


Basic Information

Item Value
RNA id TU346472
length 443
RNA type TUCP
GC content 0.33
exon number 1
gene id G304938
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2317792 ~ 2318234 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACATCAATGGCTGTAATCTTAATTTATCGACCTCCAAAATTTCATTCAGACTTTTTCTCTGAGATTAGTGAGTTACTTACTCTTGTCTGTGCTAGTTATTCATCTGTAATTTTTCTTGGTGACTTTAATATACATGAACACACTGTACAATGCAACGAATTGATGTCTGTTCTGGATTGTTTCAGTCTAACTCAACATGTAACTTTTGCTACTTACTCCAGGAGTCATATATTGGATCTTATATGTACATCTGGCTTATATAATATTCTTGTTAGTGGAACTGATTTTGCTTTTTCAGATCACAAACTCCTAAGCTTCAGTTTTAGTTTTCCTACATCTATATCGCCTGTGGAAAAAAAAAAAAAAAAAATGCTCACTTATCGTAAAATCTGTTCTGTGGATCCATCTGCTTTCTCTGATTCAATAAGGGCTTCTACCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346468 lncRNA upstream 6151 2311399 ~ 2311641 (+) True G304934
TU346464 lncRNA upstream 17273 2300294 ~ 2300519 (+) True G304930
TU346440 lncRNA upstream 59105 2258273 ~ 2258687 (+) True G304907
TU346439 lncRNA upstream 60142 2257366 ~ 2257650 (+) True G304906
TU346434 lncRNA upstream 73515 2244072 ~ 2244277 (+) True G304901
TU346490 lncRNA downstream 32486 2350720 ~ 2350923 (+) True G304955
TU346498 lncRNA downstream 63024 2381258 ~ 2381543 (+) True G304963
TU346501 lncRNA downstream 75896 2394130 ~ 2394368 (+) True G304966
TU346502 lncRNA downstream 77676 2395910 ~ 2396126 (+) True G304967
TU346503 lncRNA downstream 83961 2402195 ~ 2402505 (+) True G304968
CI01000092_02279826_02285934.mRNA mRNA upstream 31713 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02186791_02187942.mRNA mRNA upstream 129850 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_01989763_02003920.mRNA mRNA upstream 313662 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 331105 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_01962495_01963651.mRNA mRNA upstream 353905 1962495 ~ 1963887 (+) True CI01000092_01962495_01963651
CI01000092_02358901_02363225.mRNA mRNA downstream 39669 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02395791_02407508.mRNA mRNA downstream 77367 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02411552_02412283.mRNA mRNA downstream 93318 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02418597_02419541.mRNA mRNA downstream 100174 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02470059_02471839.mRNA mRNA downstream 151118 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
TU345140 other upstream 1001269 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1349074 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1408113 3726347 ~ 3861333 (+) False G305596

Expression Profile