RNA id: TU346498


Basic Information

Item Value
RNA id TU346498
length 286
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G304963
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2381258 ~ 2381543 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAGTTCAGAGAGGCGAAGGCGCGCTTGGCGGCGTTTAAGAACTGTATACTGCTTAGATCCGATCCTGGGCCCAGACAGACAGGAGGTCCTGGCCCGTCCTGATTTGAGGATCGGAGACAGGGCCAGAGGTCCAGTGTTGCCTCTCGGGCACCTCCTCCTCGGAGTAAGTCCCAGACAAGGCGGGACTCTAGGAAGAAGAAGCAGGATCTGAGGGAGGTAATCAACCGCAGACGCCAGCAGCGTCAGTGATTGGTTTCCTCTCTATGAGGGTAGTTCACTTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346490 lncRNA upstream 30335 2350720 ~ 2350923 (+) True G304955
TU346468 lncRNA upstream 69617 2311399 ~ 2311641 (+) True G304934
TU346464 lncRNA upstream 80739 2300294 ~ 2300519 (+) True G304930
TU346440 lncRNA upstream 122571 2258273 ~ 2258687 (+) True G304907
TU346439 lncRNA upstream 123608 2257366 ~ 2257650 (+) True G304906
TU346501 lncRNA downstream 12587 2394130 ~ 2394368 (+) True G304966
TU346502 lncRNA downstream 14367 2395910 ~ 2396126 (+) True G304967
TU346503 lncRNA downstream 20652 2402195 ~ 2402505 (+) True G304968
TU346505 lncRNA downstream 23595 2405138 ~ 2405536 (+) False G304969
TU346504 lncRNA downstream 23683 2405226 ~ 2405562 (+) True G304969
CI01000092_02358901_02363225.mRNA mRNA upstream 16796 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02279826_02285934.mRNA mRNA upstream 95179 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02186791_02187942.mRNA mRNA upstream 193316 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_01989763_02003920.mRNA mRNA upstream 377128 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 394571 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_02395791_02407508.mRNA mRNA downstream 14058 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02411552_02412283.mRNA mRNA downstream 30009 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02418597_02419541.mRNA mRNA downstream 36865 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02470059_02471839.mRNA mRNA downstream 87809 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02661524_02662121.mRNA mRNA downstream 279840 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
TU346472 other upstream 63024 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1064735 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1285765 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1344804 3726347 ~ 3861333 (+) False G305596

Expression Profile