RNA id: TU346502



Basic Information


Item Value
RNA id TU346502
length 217
lncRNA type intronic
GC content 0.48
exon number 1
gene id G304967
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2395910 ~ 2396126 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCTTTGTCTTCCGAGCCGCCAACCTCACATGACGCTGACGCTCTGAATGCTGTTTGCCCTGTCAGGGCTTTATGAGGATATGCTATGGTGGCTGTACTAAAGGACGTGCAGTATCTAAATCAATAAGGATTTAATTCTGTTCCCGCAGCATCACTGTCACAATATTGAAGTGACCGCTCCAGAAAGGGAACGTCTCTGTTGTAACCTCGTCTCCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346501 lncRNA upstream 1542 2394130 ~ 2394368 (+) True G304966
TU346498 lncRNA upstream 14367 2381258 ~ 2381543 (+) True G304963
TU346490 lncRNA upstream 44987 2350720 ~ 2350923 (+) True G304955
TU346468 lncRNA upstream 84269 2311399 ~ 2311641 (+) True G304934
TU346464 lncRNA upstream 95391 2300294 ~ 2300519 (+) True G304930
TU346503 lncRNA downstream 6069 2402195 ~ 2402505 (+) True G304968
TU346505 lncRNA downstream 9012 2405138 ~ 2405536 (+) False G304969
TU346504 lncRNA downstream 9100 2405226 ~ 2405562 (+) True G304969
TU346506 lncRNA downstream 10565 2406691 ~ 2407113 (+) False CI01000092_02395791_02407508
TU346508 lncRNA downstream 11220 2407346 ~ 2407642 (+) True CI01000092_02395791_02407508
CI01000092_02358901_02363225.mRNA mRNA upstream 31448 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02279826_02285934.mRNA mRNA upstream 109831 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02186791_02187942.mRNA mRNA upstream 207968 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_01989763_02003920.mRNA mRNA upstream 391780 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 409223 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_02411552_02412283.mRNA mRNA downstream 15426 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02418597_02419541.mRNA mRNA downstream 22282 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02470059_02471839.mRNA mRNA downstream 73226 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02661524_02662121.mRNA mRNA downstream 265257 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02721458_02724152.mRNA mRNA downstream 325267 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
TU346472 other upstream 77676 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1079387 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1271182 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1330221 3726347 ~ 3861333 (+) False G305596

Expression Profile