RNA id: TU346503


Basic Information

Item Value
RNA id TU346503
length 311
lncRNA type intronic
GC content 0.34
exon number 1
gene id G304968
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2402195 ~ 2402505 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAACGGGTTATGTCATGGTCACAAGACATTCAGTTGTGGTCACGAGATATTGATCTGTGGATATGTGATAAAATGTTGCCATGAGATCATTTTGTTGAGGTAACGACATCCTTATGTCATGGCCACGTGATGTGAGTTTGTGAATTTTTTTTCTTTTAATTTACTGGATATCTAAAGTTTACCAATAAATACAAATCAACATTTAATCCATAACTAGCTATTGTCACACTGTGGCAAAGCATGGTTAAACAGGAATATGATGAAGATGAAATAGGAATAAACAGGCTTTATTATAAGAACTAAACTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346502 lncRNA upstream 6069 2395910 ~ 2396126 (+) True G304967
TU346501 lncRNA upstream 7827 2394130 ~ 2394368 (+) True G304966
TU346498 lncRNA upstream 20652 2381258 ~ 2381543 (+) True G304963
TU346490 lncRNA upstream 51272 2350720 ~ 2350923 (+) True G304955
TU346468 lncRNA upstream 90554 2311399 ~ 2311641 (+) True G304934
TU346505 lncRNA downstream 2633 2405138 ~ 2405536 (+) False G304969
TU346504 lncRNA downstream 2721 2405226 ~ 2405562 (+) True G304969
TU346506 lncRNA downstream 4186 2406691 ~ 2407113 (+) False CI01000092_02395791_02407508
TU346508 lncRNA downstream 4841 2407346 ~ 2407642 (+) True CI01000092_02395791_02407508
TU346509 lncRNA downstream 5701 2408206 ~ 2408820 (+) True G304972
CI01000092_02358901_02363225.mRNA mRNA upstream 37733 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02279826_02285934.mRNA mRNA upstream 116116 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02186791_02187942.mRNA mRNA upstream 214253 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_01989763_02003920.mRNA mRNA upstream 398065 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 415508 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_02411552_02412283.mRNA mRNA downstream 9047 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02418597_02419541.mRNA mRNA downstream 15903 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02470059_02471839.mRNA mRNA downstream 66847 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02661524_02662121.mRNA mRNA downstream 258878 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02721458_02724152.mRNA mRNA downstream 318888 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
TU346472 other upstream 83961 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1085672 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1264803 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1323842 3726347 ~ 3861333 (+) False G305596

Expression Profile