RNA id: TU346505


Basic Information

Item Value
RNA id TU346505
length 399
lncRNA type intronic
GC content 0.28
exon number 1
gene id G304969
representative False

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2405138 ~ 2405562 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATATAGTTTAATTAAATTTAAAAGGGTTAAAATTGTAAAATAAATTAGCAAATTAATTGCATACATTCTCTTTTTTGAGGACGAAGTAAAATGTATGGTTTTAATCAATTTTGAGAGAATATTTGGGGATTGATTGCAAAAATGTCAATGTGGTGTAACCGTAAAAACTGTGTACCAAATAATTCATCTTGTTTAAAAAAGGTGAAATTCTCAATAAAACACCATATCAGCTAGCTTGGCATAATCTTACATTAGAACAATTTAATAGTATATAAAAATAAATTGAACACCATTGTTCTGATTATAAATAATTTGGGGAATCATAGGAGTCAAGTCAAATTAGTGAAGTGTCAAGGTGGTGTAACCACCATTCAAGGAGCCATTTTGTTAATATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346503 lncRNA upstream 2633 2402195 ~ 2402505 (+) True G304968
TU346502 lncRNA upstream 9012 2395910 ~ 2396126 (+) True G304967
TU346501 lncRNA upstream 10770 2394130 ~ 2394368 (+) True G304966
TU346498 lncRNA upstream 23595 2381258 ~ 2381543 (+) True G304963
TU346490 lncRNA upstream 54215 2350720 ~ 2350923 (+) True G304955
TU346506 lncRNA downstream 1155 2406691 ~ 2407113 (+) False CI01000092_02395791_02407508
TU346508 lncRNA downstream 1810 2407346 ~ 2407642 (+) True CI01000092_02395791_02407508
TU346509 lncRNA downstream 2670 2408206 ~ 2408820 (+) True G304972
TU346510 lncRNA downstream 3760 2409296 ~ 2409733 (+) True G304973
TU346512 lncRNA downstream 6084 2411620 ~ 2411972 (+) False CI01000092_02411552_02412283
CI01000092_02358901_02363225.mRNA mRNA upstream 40676 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02279826_02285934.mRNA mRNA upstream 119059 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02186791_02187942.mRNA mRNA upstream 217196 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_01989763_02003920.mRNA mRNA upstream 401008 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_01985290_01986640.mRNA mRNA upstream 418451 1985290 ~ 1986687 (+) True CI01000092_01985290_01986640
CI01000092_02411552_02412283.mRNA mRNA downstream 6016 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02418597_02419541.mRNA mRNA downstream 12872 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02470059_02471839.mRNA mRNA downstream 63816 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02661524_02662121.mRNA mRNA downstream 255847 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02721458_02724152.mRNA mRNA downstream 315857 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
TU346472 other upstream 86904 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1088615 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1261772 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1320811 3726347 ~ 3861333 (+) False G305596

Expression Profile