RNA id: TU346510


Basic Information

Item Value
RNA id TU346510
length 438
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G304973
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2409296 ~ 2409733 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAGTGAAGTCATATCCATAGTTGCCAGTATAACATCCTGCTCAACATTTTGAATAGTTGATAGACATTGGAGGAAATCTGCTGTATCTCTCAGATAGCTAGGAAGAGATGTGACTAACGGTCTCAGAACAAAATCAACAAAATTCGAGAGTGGTTCAGTCAGACTATTGTTACCGGCTACTCTAGGCCGTCCTGGTGGATTGATTAAGCTTTTATGTACCTTGGGTAGAATGTAAAACACTGGCCTACTTGGAGAACGATTGAGCAAGTATTGCATCTCTTTATCAGAGATCAATAGATGAGCATGTGCTTTCTGAAGGAACATCTCAATCTCCCTCAGAAACTGGGCCGTTGGATCTGATGGTAAGACTTAATAGGAGGTATTTTCTAGTTGACGAAGAGCCTCCTGATTATAGAGAGCTCGAGGAAGGATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346509 lncRNA upstream 476 2408206 ~ 2408820 (+) True G304972
TU346508 lncRNA upstream 1654 2407346 ~ 2407642 (+) True CI01000092_02395791_02407508
TU346506 lncRNA upstream 2183 2406691 ~ 2407113 (+) False CI01000092_02395791_02407508
TU346504 lncRNA upstream 3734 2405226 ~ 2405562 (+) True G304969
TU346505 lncRNA upstream 3760 2405138 ~ 2405536 (+) False G304969
TU346512 lncRNA downstream 1887 2411620 ~ 2411972 (+) False CI01000092_02411552_02412283
TU346513 lncRNA downstream 2849 2413539 ~ 2413716 (+) True G304976
TU346517 lncRNA downstream 31244 2440977 ~ 2441268 (+) True G304980
TU346522 lncRNA downstream 38653 2448386 ~ 2448653 (+) True G304984
TU346525 lncRNA downstream 52128 2461861 ~ 2462108 (+) True G304987
CI01000092_02395791_02407508.mRNA mRNA upstream 1785 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02358901_02363225.mRNA mRNA upstream 44834 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02279826_02285934.mRNA mRNA upstream 123217 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02186791_02187942.mRNA mRNA upstream 221354 2186791 ~ 2187942 (+) True CI01000092_02186791_02187942
CI01000092_01989763_02003920.mRNA mRNA upstream 405166 1989763 ~ 2004130 (+) True CI01000092_01989763_02003920
CI01000092_02411552_02412283.mRNA mRNA downstream 1819 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02418597_02419541.mRNA mRNA downstream 8675 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02470059_02471839.mRNA mRNA downstream 59619 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02661524_02662121.mRNA mRNA downstream 251650 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02721458_02724152.mRNA mRNA downstream 311660 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
TU346472 other upstream 91062 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1092773 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1257575 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1316614 3726347 ~ 3861333 (+) False G305596

Expression Profile