RNA id: TU346517


Basic Information

Item Value
RNA id TU346517
length 292
lncRNA type inter_gene
GC content 0.23
exon number 1
gene id G304980
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2440977 ~ 2441268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTTAAATTATTAATCATTTACTTACACATTATAAATGATCTCATGAACCACTGACAACTCCTAAATAACTGGTTTGTAAATAATGTAATACTTAATTTAGAAATGATAAATTGATCATTAATAAAGTATGAAAATACATTTATTAAACACATTATAGATATGCTTATAAATCAAGAACAAAGCATTTATAGGTGTATTTATAAACTGCTTATTAATGTCTATTAATGCTTTATAAATGATGAACTAACTATTTACTAATGCTTAACTAATGCTTCATAGCGTGAGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346513 lncRNA upstream 27261 2413539 ~ 2413716 (+) True G304976
TU346512 lncRNA upstream 29005 2411620 ~ 2411972 (+) False CI01000092_02411552_02412283
TU346510 lncRNA upstream 31244 2409296 ~ 2409733 (+) True G304973
TU346509 lncRNA upstream 32157 2408206 ~ 2408820 (+) True G304972
TU346508 lncRNA upstream 33335 2407346 ~ 2407642 (+) True CI01000092_02395791_02407508
TU346522 lncRNA downstream 7118 2448386 ~ 2448653 (+) True G304984
TU346525 lncRNA downstream 20593 2461861 ~ 2462108 (+) True G304987
TU346641 lncRNA downstream 67774 2509042 ~ 2511516 (+) False G305084
TU346642 lncRNA downstream 67774 2509042 ~ 2517201 (+) False G305084
TU346643 lncRNA downstream 67774 2509042 ~ 2524185 (+) True G305084
CI01000092_02418597_02419541.mRNA mRNA upstream 20981 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02411552_02412283.mRNA mRNA upstream 28194 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02395791_02407508.mRNA mRNA upstream 33466 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02358901_02363225.mRNA mRNA upstream 76515 2357903 ~ 2364462 (+) True CI01000092_02358901_02363225
CI01000092_02279826_02285934.mRNA mRNA upstream 154898 2276512 ~ 2286079 (+) True CI01000092_02279826_02285934
CI01000092_02470059_02471839.mRNA mRNA downstream 28084 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02661524_02662121.mRNA mRNA downstream 220115 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02721458_02724152.mRNA mRNA downstream 280125 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
CI01000092_02739990_02745224.mRNA mRNA downstream 298722 2739990 ~ 2745247 (+) True CI01000092_02739990_02745224
CI01000092_02818349_02838255.mRNA mRNA downstream 376352 2817620 ~ 2838255 (+) True CI01000092_02818349_02838255
TU346472 other upstream 122743 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1124454 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 1226040 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1285079 3726347 ~ 3861333 (+) False G305596

Expression Profile