Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU346643 |
| length | 2221 |
| lncRNA type | antisense_over |
| GC content | 0.34 |
| exon number | 6 |
| gene id | G305084 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 2509042 ~ 2524185 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU346525 | lncRNA | upstream | 46934 | 2461861 ~ 2462108 (+) | True | G304987 |
| TU346522 | lncRNA | upstream | 60389 | 2448386 ~ 2448653 (+) | True | G304984 |
| TU346517 | lncRNA | upstream | 67774 | 2440977 ~ 2441268 (+) | True | G304980 |
| TU346513 | lncRNA | upstream | 95326 | 2413539 ~ 2413716 (+) | True | G304976 |
| TU346512 | lncRNA | upstream | 97070 | 2411620 ~ 2411972 (+) | False | CI01000092_02411552_02412283 |
| TU346627 | lncRNA | downstream | 92052 | 2616237 ~ 2617160 (+) | True | G305071 |
| TU346685 | lncRNA | downstream | 137327 | 2661512 ~ 2662183 (+) | True | CI01000092_02661524_02662121 |
| TU346712 | lncRNA | downstream | 178580 | 2702765 ~ 2702979 (+) | True | G305137 |
| TU346761 | lncRNA | downstream | 193789 | 2717974 ~ 2718193 (+) | True | G305171 |
| TU346762 | lncRNA | downstream | 194257 | 2718442 ~ 2718646 (+) | True | G305172 |
| CI01000092_02470059_02471839.mRNA | mRNA | upstream | 37091 | 2469352 ~ 2471951 (+) | True | CI01000092_02470059_02471839 |
| CI01000092_02418597_02419541.mRNA | mRNA | upstream | 89046 | 2418408 ~ 2419996 (+) | True | CI01000092_02418597_02419541 |
| CI01000092_02411552_02412283.mRNA | mRNA | upstream | 96259 | 2411552 ~ 2412783 (+) | False | CI01000092_02411552_02412283 |
| CI01000092_02395791_02407508.mRNA | mRNA | upstream | 101531 | 2395601 ~ 2407511 (+) | False | CI01000092_02395791_02407508 |
| CI01000092_02358901_02363225.mRNA | mRNA | upstream | 144580 | 2357903 ~ 2364462 (+) | True | CI01000092_02358901_02363225 |
| CI01000092_02661524_02662121.mRNA | mRNA | downstream | 137198 | 2661383 ~ 2662173 (+) | False | CI01000092_02661524_02662121 |
| CI01000092_02721458_02724152.mRNA | mRNA | downstream | 197208 | 2721393 ~ 2724152 (+) | True | CI01000092_02721458_02724152 |
| CI01000092_02739990_02745224.mRNA | mRNA | downstream | 215805 | 2739990 ~ 2745247 (+) | True | CI01000092_02739990_02745224 |
| CI01000092_02818349_02838255.mRNA | mRNA | downstream | 293435 | 2817620 ~ 2838255 (+) | True | CI01000092_02818349_02838255 |
| CI01000092_02958119_02966042.mRNA | mRNA | downstream | 433839 | 2958024 ~ 2966463 (+) | True | CI01000092_02958119_02966042 |
| TU346472 | other | upstream | 190808 | 2317792 ~ 2318234 (+) | True | G304938 |
| TU345140 | other | upstream | 1192519 | 1315443 ~ 1316523 (+) | True | G303768 |
| TU347218 | other | downstream | 1143123 | 3667308 ~ 3667965 (+) | True | G305584 |
| TU347240 | other | downstream | 1202162 | 3726347 ~ 3861333 (+) | False | G305596 |
