RNA id: TU346761


Basic Information

Item Value
RNA id TU346761
length 220
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G305171
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2717974 ~ 2718193 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACAAGCCATGCTGCTGTCACGCCACAGATCATGTTCTCACGCAGTGAAAAAGGTACATCGCAGAGCAAAGAGGACACTGACAACGTGTCGACAGACAAGGCAGAGCAGGTTACTTTTGATATGAAACAAAGTCTAAAATTTCAAATATTGTAATTTTTAAAGAAATTTAAACAATAAATACCATTTTGTGGCTCTTTAATGTGTCATGACAGATCGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346712 lncRNA upstream 14995 2702765 ~ 2702979 (+) True G305137
TU346685 lncRNA upstream 55791 2661512 ~ 2662183 (+) True CI01000092_02661524_02662121
TU346627 lncRNA upstream 100814 2616237 ~ 2617160 (+) True G305071
TU346643 lncRNA upstream 193789 2509042 ~ 2524185 (+) True G305084
TU346642 lncRNA upstream 200773 2509042 ~ 2517201 (+) False G305084
TU346762 lncRNA downstream 249 2718442 ~ 2718646 (+) True G305172
TU346708 lncRNA downstream 9110 2727303 ~ 2727705 (+) True G305133
TU346770 lncRNA downstream 16244 2734437 ~ 2734688 (+) True G305180
TU346773 lncRNA downstream 19319 2737512 ~ 2737868 (+) True G305183
TU346777 lncRNA downstream 29308 2747501 ~ 2747707 (+) True G305187
CI01000092_02661524_02662121.mRNA mRNA upstream 55801 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02470059_02471839.mRNA mRNA upstream 246023 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02418597_02419541.mRNA mRNA upstream 297978 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02411552_02412283.mRNA mRNA upstream 305191 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02395791_02407508.mRNA mRNA upstream 310463 2395601 ~ 2407511 (+) False CI01000092_02395791_02407508
CI01000092_02721458_02724152.mRNA mRNA downstream 3200 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
CI01000092_02739990_02745224.mRNA mRNA downstream 21797 2739990 ~ 2745247 (+) True CI01000092_02739990_02745224
CI01000092_02818349_02838255.mRNA mRNA downstream 99427 2817620 ~ 2838255 (+) True CI01000092_02818349_02838255
CI01000092_02958119_02966042.mRNA mRNA downstream 239831 2958024 ~ 2966463 (+) True CI01000092_02958119_02966042
CI01000092_02977237_02979350.mRNA mRNA downstream 259044 2977237 ~ 2979378 (+) True CI01000092_02977237_02979350
TU346472 other upstream 399740 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1401451 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 949115 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 1008154 3726347 ~ 3861333 (+) False G305596

Expression Profile