RNA id: TU346708


Basic Information

Item Value
RNA id TU346708
length 403
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G305133
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2727303 ~ 2727705 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACAGACTGATATATTTCAAATGTTTATTTCTTTTAATTTTGATGATTATAACTGACAACTAAGGAAAATCCCAAATTCAGTATCTCAGAAAATTAGAATATTGTGAAAAGGTTCAACTTTGAAGACACCTGGTGCCACACTCTAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGGTCTCTCAGTCTAGTTCTGTAGGCTACACAATCATGGGGAAGACTGCTGACTTGACAGTTGTCCAAAAGACGACCATTGACCCCTTGCACAAGGAGGACAAGACACAAAAGGTCATTGCAAAAGAGGCTGGCTGTTCACAGAGCTCTGTGTCCAAGCACATTAATAAAGAGGCGAAGGGAAGGAAAAGATATGGTAGATAAAAGTGTACAAGCAN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346762 lncRNA upstream 8657 2718442 ~ 2718646 (+) True G305172
TU346761 lncRNA upstream 9110 2717974 ~ 2718193 (+) True G305171
TU346712 lncRNA upstream 24324 2702765 ~ 2702979 (+) True G305137
TU346685 lncRNA upstream 65120 2661512 ~ 2662183 (+) True CI01000092_02661524_02662121
TU346627 lncRNA upstream 110143 2616237 ~ 2617160 (+) True G305071
TU346770 lncRNA downstream 6732 2734437 ~ 2734688 (+) True G305180
TU346773 lncRNA downstream 9807 2737512 ~ 2737868 (+) True G305183
TU346777 lncRNA downstream 19796 2747501 ~ 2747707 (+) True G305187
TU346778 lncRNA downstream 20656 2748361 ~ 2748594 (+) True G305188
TU346799 lncRNA downstream 45306 2773011 ~ 2786207 (+) True G305206
CI01000092_02721458_02724152.mRNA mRNA upstream 3151 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
CI01000092_02661524_02662121.mRNA mRNA upstream 65130 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02470059_02471839.mRNA mRNA upstream 255352 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02418597_02419541.mRNA mRNA upstream 307307 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02411552_02412283.mRNA mRNA upstream 314520 2411552 ~ 2412783 (+) False CI01000092_02411552_02412283
CI01000092_02739990_02745224.mRNA mRNA downstream 12285 2739990 ~ 2745247 (+) True CI01000092_02739990_02745224
CI01000092_02818349_02838255.mRNA mRNA downstream 89915 2817620 ~ 2838255 (+) True CI01000092_02818349_02838255
CI01000092_02958119_02966042.mRNA mRNA downstream 230319 2958024 ~ 2966463 (+) True CI01000092_02958119_02966042
CI01000092_02977237_02979350.mRNA mRNA downstream 249532 2977237 ~ 2979378 (+) True CI01000092_02977237_02979350
CI01000092_03007267_03029327.mRNA mRNA downstream 279562 3007267 ~ 3029327 (+) True CI01000092_03007267_03029327
TU346472 other upstream 409069 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1410780 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 939603 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 998642 3726347 ~ 3861333 (+) False G305596

Expression Profile