RNA id: TU346778


Basic Information

Item Value
RNA id TU346778
length 234
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G305188
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2748361 ~ 2748594 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAAGGTTTCAAAGCATCGAGAGTGTCGAAAACAGCGCCATCTTGTGGCAGGAAAAATTTACAACAGCCATAACCCTGAGTGCGCAATTCCGTTGTTTTATCTATTAAGCACAAAAAGCCTGACGACGCTAAATGTGTTTATTTCAATAATCTAATTCACATATTAAAGTTTGGCAATAAATGAAATGGATCAACAAAAACAATAATTATAATAATACTATACTGAGTTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346777 lncRNA upstream 654 2747501 ~ 2747707 (+) True G305187
TU346773 lncRNA upstream 10493 2737512 ~ 2737868 (+) True G305183
TU346770 lncRNA upstream 13673 2734437 ~ 2734688 (+) True G305180
TU346708 lncRNA upstream 20656 2727303 ~ 2727705 (+) True G305133
TU346762 lncRNA upstream 29715 2718442 ~ 2718646 (+) True G305172
TU346799 lncRNA downstream 24417 2773011 ~ 2786207 (+) True G305206
TU346812 lncRNA downstream 48092 2796686 ~ 2796940 (+) True G305219
TU346813 lncRNA downstream 50040 2798634 ~ 2798880 (+) True G305220
TU346823 lncRNA downstream 74685 2823279 ~ 2823507 (+) True G305230
TU346840 lncRNA downstream 90468 2839062 ~ 2839329 (+) True G305244
CI01000092_02739990_02745224.mRNA mRNA upstream 3114 2739990 ~ 2745247 (+) True CI01000092_02739990_02745224
CI01000092_02721458_02724152.mRNA mRNA upstream 24209 2721393 ~ 2724152 (+) True CI01000092_02721458_02724152
CI01000092_02661524_02662121.mRNA mRNA upstream 86188 2661383 ~ 2662173 (+) False CI01000092_02661524_02662121
CI01000092_02470059_02471839.mRNA mRNA upstream 276410 2469352 ~ 2471951 (+) True CI01000092_02470059_02471839
CI01000092_02418597_02419541.mRNA mRNA upstream 328365 2418408 ~ 2419996 (+) True CI01000092_02418597_02419541
CI01000092_02818349_02838255.mRNA mRNA downstream 69026 2817620 ~ 2838255 (+) True CI01000092_02818349_02838255
CI01000092_02958119_02966042.mRNA mRNA downstream 209430 2958024 ~ 2966463 (+) True CI01000092_02958119_02966042
CI01000092_02977237_02979350.mRNA mRNA downstream 228643 2977237 ~ 2979378 (+) True CI01000092_02977237_02979350
CI01000092_03007267_03029327.mRNA mRNA downstream 258673 3007267 ~ 3029327 (+) True CI01000092_03007267_03029327
CI01000092_03080030_03082866.mRNA mRNA downstream 330968 3079562 ~ 3083624 (+) False CI01000092_03080030_03082866
TU346472 other upstream 430127 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 1431838 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 918714 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 977753 3726347 ~ 3861333 (+) False G305596

Expression Profile