RNA id: TU347190


Basic Information

Item Value
RNA id TU347190
length 420
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G305561
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3597712 ~ 3598766 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAGGTATTCCAAAAAACGTGGCACTAGGATTATTGTAACTTTAATGGATTGGAGTAGCCGTATTTCTGACACGGATAAATACAAACAAACAAACAAAATTAACATAAATTTTAAATTAAATAATGTGTAATACTAGAAGTGAGACTGACTTGTTAAGAGAAGAACTGAGAGAAATGTATATGAAGGCCCTCAGCTAGGAAGACAAAGACTCTTGGCTGACTTTTTACAGGTAAATCTGACACAACCTCTCAAGAACATGTCAAAATCTGTTACTACGGAGCACCTAAAGGGACATACTGTAGTCATGGGAAAAATATGAGAAAATATGCTTTTGCATTCACTTTTAAAACTTTTGTGATCTTTGCGAGAGGACGCAAAAACATTGACAAATACTTTTTCCTCCCATCTCATATTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347181 lncRNA upstream 10890 3586872 ~ 3587109 (+) True G305558
TU347158 lncRNA upstream 22046 3507282 ~ 3575953 (+) True G305535
TU347145 lncRNA upstream 152882 3444826 ~ 3445117 (+) True G305529
TU347113 lncRNA upstream 197511 3399821 ~ 3400488 (+) True G305499
TU347107 lncRNA upstream 207761 3384815 ~ 3390238 (+) True G305493
TU347191 lncRNA downstream 471 3598889 ~ 3599275 (+) True G305562
TU347197 lncRNA downstream 59646 3658064 ~ 3661242 (+) True G305565
TU347215 lncRNA downstream 63879 3662297 ~ 3662516 (+) True G305581
TU347217 lncRNA downstream 68320 3666738 ~ 3667015 (+) True G305583
TU347219 lncRNA downstream 69589 3668007 ~ 3668223 (+) True G305585
CI01000092_03551674_03573437.mRNA mRNA upstream 24507 3551674 ~ 3573492 (+) True CI01000092_03551674_03573437
CI01000092_03532136_03542761.mRNA mRNA upstream 55116 3532136 ~ 3542883 (+) True CI01000092_03532136_03542761
CI01000092_03478431_03479274.mRNA mRNA upstream 118206 3478431 ~ 3479793 (+) True CI01000092_03478431_03479274
CI01000092_03433283_03442900.mRNA mRNA upstream 155039 3433283 ~ 3442960 (+) True CI01000092_03433283_03442900
CI01000092_03329908_03348045.mRNA mRNA upstream 249680 3329908 ~ 3348319 (+) True CI01000092_03329908_03348045
CI01000092_03693715_03694890.mRNA mRNA downstream 92132 3690550 ~ 3695228 (+) True CI01000092_03693715_03694890
CI01000092_03725440_03728304.mRNA mRNA downstream 124625 3723043 ~ 3728325 (+) True CI01000092_03725440_03728304
CI01000092_03816152_03827312.mRNA mRNA downstream 217734 3816152 ~ 3827361 (+) True CI01000092_03816152_03827312
CI01000092_03828205_03831437.mRNA mRNA downstream 229787 3828205 ~ 3831775 (+) True CI01000092_03828205_03831437
CI01000092_04205017_04213986.mRNA mRNA downstream 606599 4205017 ~ 4214128 (+) True CI01000092_04205017_04213986
TU346472 other upstream 1279765 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 2281476 1315443 ~ 1316523 (+) True G303768
TU347218 other downstream 68890 3667308 ~ 3667965 (+) True G305584
TU347240 other downstream 127929 3726347 ~ 3861333 (+) False G305596

Expression Profile