Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU347230 |
| length | 2428 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G305590 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 3671443 ~ 3674407 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU347219 | lncRNA | upstream | 3757 | 3668007 ~ 3668223 (+) | True | G305585 |
| TU347217 | lncRNA | upstream | 4965 | 3666738 ~ 3667015 (+) | True | G305583 |
| TU347215 | lncRNA | upstream | 9464 | 3662297 ~ 3662516 (+) | True | G305581 |
| TU347197 | lncRNA | upstream | 10738 | 3658064 ~ 3661242 (+) | True | G305565 |
| TU347191 | lncRNA | upstream | 72705 | 3598889 ~ 3599275 (+) | True | G305562 |
| TU347224 | lncRNA | downstream | 2362 | 3676769 ~ 3677771 (+) | True | G305588 |
| TU347226 | lncRNA | downstream | 3476 | 3677883 ~ 3679488 (+) | False | G305589 |
| TU347227 | lncRNA | downstream | 3952 | 3678359 ~ 3679488 (+) | True | G305589 |
| TU347231 | lncRNA | downstream | 7850 | 3682257 ~ 3682623 (+) | True | G305591 |
| TU347252 | lncRNA | downstream | 58943 | 3733350 ~ 3750471 (+) | True | G305599 |
| CI01000092_03551674_03573437.mRNA | mRNA | upstream | 98488 | 3551674 ~ 3573492 (+) | True | CI01000092_03551674_03573437 |
| CI01000092_03532136_03542761.mRNA | mRNA | upstream | 129097 | 3532136 ~ 3542883 (+) | True | CI01000092_03532136_03542761 |
| CI01000092_03478431_03479274.mRNA | mRNA | upstream | 192187 | 3478431 ~ 3479793 (+) | True | CI01000092_03478431_03479274 |
| CI01000092_03433283_03442900.mRNA | mRNA | upstream | 229020 | 3433283 ~ 3442960 (+) | True | CI01000092_03433283_03442900 |
| CI01000092_03329908_03348045.mRNA | mRNA | upstream | 323661 | 3329908 ~ 3348319 (+) | True | CI01000092_03329908_03348045 |
| CI01000092_03693715_03694890.mRNA | mRNA | downstream | 16143 | 3690550 ~ 3695228 (+) | True | CI01000092_03693715_03694890 |
| CI01000092_03725440_03728304.mRNA | mRNA | downstream | 48636 | 3723043 ~ 3728325 (+) | True | CI01000092_03725440_03728304 |
| CI01000092_03816152_03827312.mRNA | mRNA | downstream | 141745 | 3816152 ~ 3827361 (+) | True | CI01000092_03816152_03827312 |
| CI01000092_03828205_03831437.mRNA | mRNA | downstream | 153798 | 3828205 ~ 3831775 (+) | True | CI01000092_03828205_03831437 |
| CI01000092_04205017_04213986.mRNA | mRNA | downstream | 530610 | 4205017 ~ 4214128 (+) | True | CI01000092_04205017_04213986 |
| TU347218 | other | upstream | 4015 | 3667308 ~ 3667965 (+) | True | G305584 |
| TU346472 | other | upstream | 1353746 | 2317792 ~ 2318234 (+) | True | G304938 |
| TU345140 | other | upstream | 2355457 | 1315443 ~ 1316523 (+) | True | G303768 |
| TU347240 | other | downstream | 51940 | 3726347 ~ 3861333 (+) | False | G305596 |
