Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU347227 |
| length | 1130 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 1 |
| gene id | G305589 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 3677883 ~ 3679488 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU347224 | lncRNA | upstream | 588 | 3676769 ~ 3677771 (+) | True | G305588 |
| TU347230 | lncRNA | upstream | 3952 | 3671980 ~ 3674407 (+) | True | G305590 |
| TU347229 | lncRNA | upstream | 4662 | 3671443 ~ 3673697 (+) | False | G305590 |
| TU347228 | lncRNA | upstream | 4662 | 3671980 ~ 3673697 (+) | False | G305590 |
| TU347219 | lncRNA | upstream | 10136 | 3668007 ~ 3668223 (+) | True | G305585 |
| TU347231 | lncRNA | downstream | 2769 | 3682257 ~ 3682623 (+) | True | G305591 |
| TU347252 | lncRNA | downstream | 53862 | 3733350 ~ 3750471 (+) | True | G305599 |
| TU347248 | lncRNA | downstream | 169993 | 3849481 ~ 3863135 (+) | True | G305596 |
| TU347314 | lncRNA | downstream | 185804 | 3865292 ~ 3865638 (+) | True | G305655 |
| TU347258 | lncRNA | downstream | 203201 | 3882689 ~ 3906909 (+) | True | G305605 |
| CI01000092_03551674_03573437.mRNA | mRNA | upstream | 104867 | 3551674 ~ 3573492 (+) | True | CI01000092_03551674_03573437 |
| CI01000092_03532136_03542761.mRNA | mRNA | upstream | 135476 | 3532136 ~ 3542883 (+) | True | CI01000092_03532136_03542761 |
| CI01000092_03478431_03479274.mRNA | mRNA | upstream | 198566 | 3478431 ~ 3479793 (+) | True | CI01000092_03478431_03479274 |
| CI01000092_03433283_03442900.mRNA | mRNA | upstream | 235399 | 3433283 ~ 3442960 (+) | True | CI01000092_03433283_03442900 |
| CI01000092_03329908_03348045.mRNA | mRNA | upstream | 330040 | 3329908 ~ 3348319 (+) | True | CI01000092_03329908_03348045 |
| CI01000092_03693715_03694890.mRNA | mRNA | downstream | 11062 | 3690550 ~ 3695228 (+) | True | CI01000092_03693715_03694890 |
| CI01000092_03725440_03728304.mRNA | mRNA | downstream | 43555 | 3723043 ~ 3728325 (+) | True | CI01000092_03725440_03728304 |
| CI01000092_03816152_03827312.mRNA | mRNA | downstream | 136664 | 3816152 ~ 3827361 (+) | True | CI01000092_03816152_03827312 |
| CI01000092_03828205_03831437.mRNA | mRNA | downstream | 148717 | 3828205 ~ 3831775 (+) | True | CI01000092_03828205_03831437 |
| CI01000092_04205017_04213986.mRNA | mRNA | downstream | 525529 | 4205017 ~ 4214128 (+) | True | CI01000092_04205017_04213986 |
| TU347218 | other | upstream | 10394 | 3667308 ~ 3667965 (+) | True | G305584 |
| TU346472 | other | upstream | 1360125 | 2317792 ~ 2318234 (+) | True | G304938 |
| TU345140 | other | upstream | 2361836 | 1315443 ~ 1316523 (+) | True | G303768 |
| TU347240 | other | downstream | 46859 | 3726347 ~ 3861333 (+) | False | G305596 |
