Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU347248 |
| length | 1760 |
| lncRNA type | read_through |
| GC content | 0.45 |
| exon number | 3 |
| gene id | G305596 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 3726347 ~ 3863135 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU347252 | lncRNA | upstream | 99010 | 3733350 ~ 3750471 (+) | True | G305599 |
| TU347231 | lncRNA | upstream | 166858 | 3682257 ~ 3682623 (+) | True | G305591 |
| TU347226 | lncRNA | upstream | 169993 | 3677883 ~ 3679488 (+) | False | G305589 |
| TU347227 | lncRNA | upstream | 169993 | 3678359 ~ 3679488 (+) | True | G305589 |
| TU347224 | lncRNA | upstream | 171710 | 3676769 ~ 3677771 (+) | True | G305588 |
| TU347314 | lncRNA | downstream | 2157 | 3865292 ~ 3865638 (+) | True | G305655 |
| TU347258 | lncRNA | downstream | 19554 | 3882689 ~ 3906909 (+) | True | G305605 |
| TU347323 | lncRNA | downstream | 43855 | 3906990 ~ 3907365 (+) | True | G305662 |
| TU347324 | lncRNA | downstream | 46628 | 3909763 ~ 3910933 (+) | True | G305663 |
| TU347325 | lncRNA | downstream | 54197 | 3917332 ~ 3917686 (+) | True | G305664 |
| CI01000092_03828205_03831437.mRNA | mRNA | upstream | 17706 | 3828205 ~ 3831775 (+) | True | CI01000092_03828205_03831437 |
| CI01000092_03816152_03827312.mRNA | mRNA | upstream | 22120 | 3816152 ~ 3827361 (+) | True | CI01000092_03816152_03827312 |
| CI01000092_03725440_03728304.mRNA | mRNA | upstream | 121156 | 3723043 ~ 3728325 (+) | True | CI01000092_03725440_03728304 |
| CI01000092_03693715_03694890.mRNA | mRNA | upstream | 154253 | 3690550 ~ 3695228 (+) | True | CI01000092_03693715_03694890 |
| CI01000092_03551674_03573437.mRNA | mRNA | upstream | 275989 | 3551674 ~ 3573492 (+) | True | CI01000092_03551674_03573437 |
| CI01000092_04205017_04213986.mRNA | mRNA | downstream | 341882 | 4205017 ~ 4214128 (+) | True | CI01000092_04205017_04213986 |
| CI01000092_04218446_04223477.mRNA | mRNA | downstream | 355311 | 4218446 ~ 4224664 (+) | True | CI01000092_04218446_04223477 |
| CI01000092_04284298_04291859.mRNA | mRNA | downstream | 421163 | 4284298 ~ 4291859 (+) | True | CI01000092_04284298_04291859 |
| CI01000092_04335830_04347365.mRNA | mRNA | downstream | 472695 | 4335830 ~ 4347554 (+) | True | CI01000092_04335830_04347365 |
| CI01000092_04355642_04374319.mRNA | mRNA | downstream | 491730 | 4354865 ~ 4374322 (+) | True | CI01000092_04355642_04374319 |
| TU347218 | other | upstream | 181516 | 3667308 ~ 3667965 (+) | True | G305584 |
| TU346472 | other | upstream | 1531247 | 2317792 ~ 2318234 (+) | True | G304938 |
| TU345140 | other | upstream | 2532958 | 1315443 ~ 1316523 (+) | True | G303768 |
