RNA id: TU347314


Basic Information

Item Value
RNA id TU347314
length 347
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G305655
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3865292 ~ 3865638 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTAATTAATGCCCATGCTCTTGTTAATAGAATTGATTCAGAAGCCTTCTTCAGCTGCATCAAAATAATGGCTGTAAAAATGGTCAATAACAAGCCAGTTTCATCCTGTTGATAAGACTCATGCATGCACTCTAAAAATGCTGGGGTAAAAACAAGCCAAGTTGGGTTGAAAATGGACAAACCCAGCAAATGGGCTGTTATGACCCAGCGGTTGGGTTGAATGTTTGTCCAATGTGCTGGGCAGTTTTATTTAACTCAACTATTTTTTAAAAATGACTATATGGCTGACTTAAAATGAACCCAAAATAGGTTGGAAATTAAAAATCAGACACATAATTACTAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347248 lncRNA upstream 2157 3849481 ~ 3863135 (+) True G305596
TU347252 lncRNA upstream 114821 3733350 ~ 3750471 (+) True G305599
TU347231 lncRNA upstream 182669 3682257 ~ 3682623 (+) True G305591
TU347226 lncRNA upstream 185804 3677883 ~ 3679488 (+) False G305589
TU347227 lncRNA upstream 185804 3678359 ~ 3679488 (+) True G305589
TU347258 lncRNA downstream 17051 3882689 ~ 3906909 (+) True G305605
TU347323 lncRNA downstream 41352 3906990 ~ 3907365 (+) True G305662
TU347324 lncRNA downstream 44125 3909763 ~ 3910933 (+) True G305663
TU347325 lncRNA downstream 51694 3917332 ~ 3917686 (+) True G305664
TU347326 lncRNA downstream 52847 3918485 ~ 3918869 (+) True G305665
CI01000092_03828205_03831437.mRNA mRNA upstream 33517 3828205 ~ 3831775 (+) True CI01000092_03828205_03831437
CI01000092_03816152_03827312.mRNA mRNA upstream 37931 3816152 ~ 3827361 (+) True CI01000092_03816152_03827312
CI01000092_03725440_03728304.mRNA mRNA upstream 136967 3723043 ~ 3728325 (+) True CI01000092_03725440_03728304
CI01000092_03693715_03694890.mRNA mRNA upstream 170064 3690550 ~ 3695228 (+) True CI01000092_03693715_03694890
CI01000092_03551674_03573437.mRNA mRNA upstream 291800 3551674 ~ 3573492 (+) True CI01000092_03551674_03573437
CI01000092_04205017_04213986.mRNA mRNA downstream 339379 4205017 ~ 4214128 (+) True CI01000092_04205017_04213986
CI01000092_04218446_04223477.mRNA mRNA downstream 352808 4218446 ~ 4224664 (+) True CI01000092_04218446_04223477
CI01000092_04284298_04291859.mRNA mRNA downstream 418660 4284298 ~ 4291859 (+) True CI01000092_04284298_04291859
CI01000092_04335830_04347365.mRNA mRNA downstream 470192 4335830 ~ 4347554 (+) True CI01000092_04335830_04347365
CI01000092_04355642_04374319.mRNA mRNA downstream 489227 4354865 ~ 4374322 (+) True CI01000092_04355642_04374319
TU347240 other upstream 3959 3726347 ~ 3861333 (+) False G305596
TU347218 other upstream 197327 3667308 ~ 3667965 (+) True G305584
TU346472 other upstream 1547058 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 2548769 1315443 ~ 1316523 (+) True G303768

Expression Profile