RNA id: TU347325


Basic Information

Item Value
RNA id TU347325
length 355
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G305664
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3917332 ~ 3917686 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTTTTTTCTCCGGCGGTGTTTAACTTCAACCCAATTAAACACACCTGAAGCAGGTAATCAAGGTCTTCAGGATCGCTCGAAACTTCCAGACAGGTTTCTTGAATCAGGATTGGACACCCTGCCCAAAATAAAAAGGTTGCTGCTCACCAGACTTCACACAAGTATCTTTAAAAAGCTGACATCTGAGAGTGTACTGTTCAAGAATTACTTATACTATTAATAATAAAATGATATTGTGGTAGTGTGTTAGTGGCTGATGTGTGCAATCTCTAATGGAATTGCAAAATTAATAACTGCCAAATAAATTTCCCTAAACATTCCTACCACAACAAACAGACAGTCCAGCCCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347324 lncRNA upstream 6399 3909763 ~ 3910933 (+) True G305663
TU347323 lncRNA upstream 9967 3906990 ~ 3907365 (+) True G305662
TU347258 lncRNA upstream 10423 3882689 ~ 3906909 (+) True G305605
TU347314 lncRNA upstream 51694 3865292 ~ 3865638 (+) True G305655
TU347248 lncRNA upstream 54197 3849481 ~ 3863135 (+) True G305596
TU347326 lncRNA downstream 799 3918485 ~ 3918869 (+) True G305665
TU347327 lncRNA downstream 3346 3921032 ~ 3921965 (+) True G305666
TU347328 lncRNA downstream 4511 3922197 ~ 3922444 (+) True G305667
TU347329 lncRNA downstream 5005 3922691 ~ 3923720 (+) True G305668
TU347330 lncRNA downstream 6163 3923849 ~ 3925386 (+) True G305669
CI01000092_03828205_03831437.mRNA mRNA upstream 85557 3828205 ~ 3831775 (+) True CI01000092_03828205_03831437
CI01000092_03816152_03827312.mRNA mRNA upstream 89971 3816152 ~ 3827361 (+) True CI01000092_03816152_03827312
CI01000092_03725440_03728304.mRNA mRNA upstream 189007 3723043 ~ 3728325 (+) True CI01000092_03725440_03728304
CI01000092_03693715_03694890.mRNA mRNA upstream 222104 3690550 ~ 3695228 (+) True CI01000092_03693715_03694890
CI01000092_03551674_03573437.mRNA mRNA upstream 343840 3551674 ~ 3573492 (+) True CI01000092_03551674_03573437
CI01000092_04205017_04213986.mRNA mRNA downstream 287331 4205017 ~ 4214128 (+) True CI01000092_04205017_04213986
CI01000092_04218446_04223477.mRNA mRNA downstream 300760 4218446 ~ 4224664 (+) True CI01000092_04218446_04223477
CI01000092_04284298_04291859.mRNA mRNA downstream 366612 4284298 ~ 4291859 (+) True CI01000092_04284298_04291859
CI01000092_04335830_04347365.mRNA mRNA downstream 418144 4335830 ~ 4347554 (+) True CI01000092_04335830_04347365
CI01000092_04355642_04374319.mRNA mRNA downstream 437179 4354865 ~ 4374322 (+) True CI01000092_04355642_04374319
TU347240 other upstream 55999 3726347 ~ 3861333 (+) False G305596
TU347218 other upstream 249367 3667308 ~ 3667965 (+) True G305584
TU346472 other upstream 1599098 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 2600809 1315443 ~ 1316523 (+) True G303768

Expression Profile