RNA id: TU347335


Basic Information

Item Value
RNA id TU347335
length 358
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G305673
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3929481 ~ 3929838 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCACTGTGAACGGCCCCAGGAGAGGCGTTTTTTAACAGCACTCTGATAAATGCATCAGTATCAGAAAATAAAATGTTTGGAATTCACCATATCACAGGAGAATATATTTCATGGCCTTTTGCAAGAGCTAAAATTTTCGAGGTGACCTCCGCCTGAATTCTCAAGCTAACTCTAAAAATAACCCAGAAATCTCCCAAGATGCACTGCCTCGCTTTGACCAGCCTAGTTCAAAAGAAAACAATACTGCTTCCTCTCAATCTGTCCCAACACTTCTGCGAGTAGCCTTAAACTGACTTGCGTTCCAGGCATTCAGGAGGTTTCGGCGGTGGATGGGTGTAAATCAGTCTGTACAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347334 lncRNA upstream 819 3928405 ~ 3928662 (+) True G305672
TU347333 lncRNA upstream 2055 3927187 ~ 3927426 (+) True G305671
TU347330 lncRNA upstream 4095 3923849 ~ 3925386 (+) True G305669
TU347329 lncRNA upstream 5761 3922691 ~ 3923720 (+) True G305668
TU347328 lncRNA upstream 7037 3922197 ~ 3922444 (+) True G305667
TU347336 lncRNA downstream 5351 3935189 ~ 3936689 (+) True G305674
TU347337 lncRNA downstream 6972 3936810 ~ 3937163 (+) True G305675
TU347338 lncRNA downstream 8823 3938661 ~ 3938978 (+) True G305676
TU347255 lncRNA downstream 22130 3951968 ~ 3957510 (+) True G305602
TU347262 lncRNA downstream 29865 3959703 ~ 3960775 (+) True G305609
CI01000092_03828205_03831437.mRNA mRNA upstream 97706 3828205 ~ 3831775 (+) True CI01000092_03828205_03831437
CI01000092_03816152_03827312.mRNA mRNA upstream 102120 3816152 ~ 3827361 (+) True CI01000092_03816152_03827312
CI01000092_03725440_03728304.mRNA mRNA upstream 201156 3723043 ~ 3728325 (+) True CI01000092_03725440_03728304
CI01000092_03693715_03694890.mRNA mRNA upstream 234253 3690550 ~ 3695228 (+) True CI01000092_03693715_03694890
CI01000092_03551674_03573437.mRNA mRNA upstream 355989 3551674 ~ 3573492 (+) True CI01000092_03551674_03573437
CI01000092_04205017_04213986.mRNA mRNA downstream 275179 4205017 ~ 4214128 (+) True CI01000092_04205017_04213986
CI01000092_04218446_04223477.mRNA mRNA downstream 288608 4218446 ~ 4224664 (+) True CI01000092_04218446_04223477
CI01000092_04284298_04291859.mRNA mRNA downstream 354460 4284298 ~ 4291859 (+) True CI01000092_04284298_04291859
CI01000092_04335830_04347365.mRNA mRNA downstream 405992 4335830 ~ 4347554 (+) True CI01000092_04335830_04347365
CI01000092_04355642_04374319.mRNA mRNA downstream 425027 4354865 ~ 4374322 (+) True CI01000092_04355642_04374319
TU347240 other upstream 68148 3726347 ~ 3861333 (+) False G305596
TU347218 other upstream 261516 3667308 ~ 3667965 (+) True G305584
TU346472 other upstream 1611247 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 2612958 1315443 ~ 1316523 (+) True G303768

Expression Profile