RNA id: TU347927


Basic Information

Item Value
RNA id TU347927
length 1376
lncRNA type inter_gene
GC content 0.55
exon number 7
gene id G306205
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4306789 ~ 4313604 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATCCTGACCTCAGCAACACTCTTCAGTCCGTCCGCCATGTCTGATCTGAGGGCTGTGCGTCCTGTGGCTCTGGACACGTGTTGCTCGAGCCGTGTTGTTGAGTGTCTGGCTTTGATCTGTGCGGCCCTGAGCGCTGACCTCTGAGCCAGACCATCCCGCCGCTGCCGTTGAGCAGGTGAGCACTGAAACTCCAGCAGCATCACAGCATGAGGGAACGTTGGCTCTGGCTCCTCTGATTGGCTGTTGTCTTCCACCGTACGGCTCGGCACTTTGCCCTCACTATGGTCAGATTTGACTTCCTGTGGCTCACTTCCTGAGTCTTCCGTGAGGTCAGGATCCTGTAGTGTTGACTCTGGCAGGCTGATGAATGAGATGGTGGACTCCTCAAGAATGCCCTTCACGTCACCCGCTGCCTGTGCTCGTTCTAGAAGCTCGCTCAGCACATTTTCTTCCACAGCTGACTGGTGCTGTGGTATCGCTGAGGTCACTTCCTGTGAGGGTAACTGGACTGTGGGTGTAAGGCTTTCTTCCTGTAGACAGGTCTTGTGAGGGGAGCATGGCATGCGGCTAATGTCCATGACAGTGGGATCTGCCACTACATCCGTCTCACAGAGGGACTCATGGGTAAGAGAGAGCTGCTCCATGGATATCTGCAGGTCAGCCTGAGATTGAATCAGCGTGTCTGTGCGCAGGTGCTGCAGGGATGGAAGGGATTGGTCTGATGACTCCAGCCAATCAGAGGCATCATCGACGCTTGCATCTGTGCCACACTTTTCTGCTTCCAGCGGGATGCAAAGAGCCGTCGAACAGTCCACGCTCTCATTGTTTGTAACATCAGAGGGCAGAGGAAGAAACAAATCTGAGGCATCGTCGTGTGGGGCGTCAGTAAAGGCACTCCGGTCCTCGTCTGGGTGCTGCAAAGCAGGTGACATCAACGACCTGATCTCAGACAGCCGGTCTGGAATAGAGTGCAGTGCTGGGACTGGGTTTGCAGCTGTGCTCCGAGTCACTTCCTGTGCTCCACCGGCGAGGGCGCTGCTCTGATCAAACACCTGAGATGAACCGATATCTGACGCTCTGCCAATCAACTGGCTCAAAACAGACTGGCCCCCGTCAAACCGCTCACGAGATGCCGACTGATCTTGGAGCTCAGCACTTGAATGCGAGTCTGAATAGTTTGAGATGTGACCAGCCCCGTTCATCATGGACTGCAACGACTCGTTTGTGAAGTGGCTAGAATCAGAAGCTCTGTCCTGGTCGGTACACAGTGAGGATGATAGACGAGATGGTTCAGATGGTGCGCTGCTGTGTGCCTGTTCACCATGTCTGATGGATAACTGATCAGACAGGCGCTCAAGGATTCGATTCACAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347939 lncRNA upstream 2651 4303787 ~ 4304138 (+) True G306217
TU347912 lncRNA upstream 94739 4211608 ~ 4212050 (+) True G306200
TU347883 lncRNA upstream 145355 4161047 ~ 4161434 (+) True G306173
TU347875 lncRNA upstream 154019 4152491 ~ 4152770 (+) True G306165
TU347864 lncRNA upstream 168103 4138435 ~ 4138686 (+) True G306154
TU347967 lncRNA downstream 57975 4371579 ~ 4372133 (+) True G306241
TU347962 lncRNA downstream 75220 4388824 ~ 4425428 (+) True G306238
TU347978 lncRNA downstream 82843 4396447 ~ 4396893 (+) True G306252
TU348059 lncRNA downstream 189440 4503044 ~ 4545761 (+) False G306317
TU348057 lncRNA downstream 231363 4544967 ~ 4550487 (+) True G306317
CI01000092_04284298_04291859.mRNA mRNA upstream 14930 4284298 ~ 4291859 (+) True CI01000092_04284298_04291859
CI01000092_04218446_04223477.mRNA mRNA upstream 82125 4218446 ~ 4224664 (+) True CI01000092_04218446_04223477
CI01000092_04205017_04213986.mRNA mRNA upstream 92661 4205017 ~ 4214128 (+) True CI01000092_04205017_04213986
CI01000092_03828205_03831437.mRNA mRNA upstream 475014 3828205 ~ 3831775 (+) True CI01000092_03828205_03831437
CI01000092_03816152_03827312.mRNA mRNA upstream 479428 3816152 ~ 3827361 (+) True CI01000092_03816152_03827312
CI01000092_04335830_04347365.mRNA mRNA downstream 22226 4335830 ~ 4347554 (+) True CI01000092_04335830_04347365
CI01000092_04355642_04374319.mRNA mRNA downstream 41261 4354865 ~ 4374322 (+) True CI01000092_04355642_04374319
CI01000092_04392184_04393522.mRNA mRNA downstream 78230 4391834 ~ 4393942 (+) True CI01000092_04392184_04393522
CI01000092_04458178_04481575.mRNA mRNA downstream 144574 4458178 ~ 4481575 (+) True CI01000092_04458178_04481575
CI01000092_04496416_04505871.mRNA mRNA downstream 182812 4496416 ~ 4505910 (+) True CI01000092_04496416_04505871
TU347240 other upstream 445456 3726347 ~ 3861333 (+) False G305596
TU347218 other upstream 638824 3667308 ~ 3667965 (+) True G305584
TU346472 other upstream 1988555 2317792 ~ 2318234 (+) True G304938
TU345140 other upstream 2990266 1315443 ~ 1316523 (+) True G303768

Expression Profile