RNA id: CI01000095_00170941_00172566.mRNA


Basic Information

Item Value
RNA id CI01000095_00170941_00172566.mRNA
length 1517
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000095_00170941_00172566
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 170941 ~ 172566 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATTCTTTAGAAGGCCCAGATGTTCCTTTTTCCATCAATGAAATATCTGGAGAGTTGTTTACCGTAAGTGCCTTGGACAGAGAGGCAGTGGCTCTGTACAGATTTCTGGTGACTGTCACTGACGGACATCCCACAAAGCCTCTTTCCAGCTCAGCTGCTGTTTCAGTAAAAGTTGAGGATGTGAATGATAACTTTCCATCCTTTCTTTATGGACCATATGTGGCTAATGTTCCTGCTGGGATAACCAAAGGATCAGTTGTCTGCACAGTGATGGCAGAAGATGCAGATGCTGGATTGAACGCAAAACTAAATTTTTCTCTACATGGCCAACAGGCCCATCTCTTCTCAATTAACCCTCGCACAGGAACAGTGTTCACTACAGATTCTGTGAAGAGAAGAAATGACATCACAGTTGATGTCCATGTGCAGGATGGAGCAGATATGCCAAAAATGGACACAACAACCTTGACTGTCAGATTCCAGAATAACTCATACTTTCCTCGAATTGCAATCCAAATATATAAAGATATTCTCTCCGAGGATGCAGCTACTGCGACGCTTGTGGCTATTGTGACTGCAGAAACATCGAGAAACATACCAGTGTCTTTCTATCTGGCCTCTGGAAACTTTGGAGAAGTTTTTGAGCTTCACCACAGCACTGGCGAGCTTACTGTCAAGGATCCCTTGGATTTTGAAACCAACGTGCATTTTCATCTCGTGGTTGAAGCCAGAGACTCAGGGATACCGCCTTTTTCATCATATGCCGAACTTCATATTAATGTCAGTGACGTGAATGATAACCCACCGGTGTTCTCGCAAAGCATCTACAGATGTGACGTGTATGAGAACTTGGCTTCAAGAAGGGTGTGTAGTGTGTTAGCAGCGGATGCCGACTCTGGAGTGTTTGCAGAGGTGGAGTACTTCATTTTAGCTGGTAACATTGGGAGCACATTTAAAATAGACAAAAATCATGGTAGTCTTTCCACAACAAAGCGTTTAGATCGAGAAAATTTACCATGCTATAATCTCACTATCAAGGCCATTGATAAAGAAAACAACAGTCTTTCAGCCATTGCAACGGTTATCATCGTAGTTCTCGACACAAATGATCACGCGCCCCGCTTCTCACAGATTTTCATCGCAGAGGTTCCCGAGGATGCCCCCGTTGGCTTTTCAGTTATTCAGATAACTGCTACAGATGAAGATGTTGGTCTAAATGCTGTCATTGAATATACAATCATTGGCCAAAATAGTGAGTTCCCGTTCAGTATTGATAAAACCACTGGCACTTTACTGGTACTGCTTCCTTTGGACAGAGAAGATCAAGATCATTATATAGTGAAGGTTAACGCCAATGATTCTGCTTGGAGCGTTAGCACAGACATCACTATATACATTACAGATATCAACGACAATACACCGATCTTCTATCAACCACTTTACACCATCACTGTCCCTGAGATGAAGATGCATGAAGTTTTCCTTCTACAAGTTAGCGCTACTGACAGAGATCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351559 lncRNA downstream 17095 153592 ~ 153846 (-) True G309293
TU351534 lncRNA downstream 71836 92363 ~ 99105 (-) True G309271
TU351531 lncRNA downstream 72464 91953 ~ 98477 (-) False G309270
TU351532 lncRNA downstream 72464 91953 ~ 98477 (-) True G309270
TU351535 lncRNA downstream 72690 91642 ~ 98251 (-) True G309272
TU351561 lncRNA upstream 15228 187794 ~ 187995 (-) True G309295
TU351567 lncRNA upstream 22362 194928 ~ 195145 (-) True G309301
TU351568 lncRNA upstream 24638 197204 ~ 197769 (-) True G309302
TU351570 lncRNA upstream 29502 202068 ~ 202936 (-) True G309304
TU351571 lncRNA upstream 30460 203026 ~ 203634 (-) True G309305
CI01000095_00173095_00181309.mRNA mRNA upstream 529 173095 ~ 181309 (-) True CI01000095_00173095_00181309
CI01000095_00183587_00185442.mRNA mRNA upstream 10653 183219 ~ 186905 (-) True CI01000095_00183587_00185442
CI01000095_00219520_00237347.mRNA mRNA upstream 46870 219436 ~ 237432 (-) True CI01000095_00219520_00237347
CI01000095_00790125_00813901.mRNA mRNA upstream 616896 789462 ~ 814216 (-) True CI01000095_00790125_00813901
CI01000095_00914578_00997684.mRNA mRNA upstream 742012 914578 ~ 997684 (-) True CI01000095_00914578_00997684
TU351957 other upstream 913022 1085588 ~ 1088166 (-) True G309626
TU352106 other upstream 1006031 1178597 ~ 1181758 (-) True G309753
TU352182 other upstream 2490764 2663330 ~ 2731704 (-) True G309815
TU352668 other upstream 3019532 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 3358346 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412

Expression Profile