RNA id: CI01000095_01699194_01700598.mRNA


Basic Information

Item Value
RNA id CI01000095_01699194_01700598.mRNA
length 811
RNA type mRNA
GC content 0.40
exon number 5
gene id CI01000095_01699194_01700598
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 1699069 ~ 1700816 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAATCTTAGCTGCTCTGTGTCAGCTTGATCATTTTTGATTCTGAAGGCAACAGTTTGAAATCCAAGGTGAGTTTTTGGAATAAAGACCTACTGAATACATTTTCTACCTAAAGTATTTTTGTTCTTTGTCTTTTAATGCATTGGAGAATCCCCAGTGTGCAGCATATGAGTGCATGCAGACATCTAACTTTTCCTGCTTATTCATTTTAGATTCATCATGGCAATGCTGAGAAGTTTTCTGCTTCTTTTCATCATCTCTATGGGGAATGTACAAGGCCAAAAATGCCCCCTTGGATGGACAAGTTTTGGACTCCGATGCTACAAGTACATCTCTCAGCCGGCTAACTGGATCAGAGCAGAGAGAAACTGTCAAAGTCTTGGTGCGAATCTCGCATTTGTGCGTAATAAACTGGAAAATAATTTCCTGCTGAGTCTGTTGCCTACTCCTTCCACACGTTCTTGGGTTGGTGCTCATGAAGGTGTACAAGACGGACAGTGGTTGTGGAGTGATGGAACTCCATTTTTATATACCAACTGGTGCTCTGGAGAACCTAACAATCACAAAAGTGCCGAGAACTGTTTGGAGATCAACTTTCCCCCTAACCGTTGCTGGAATGATGCGCCCTGTTCAGTCTTAAAGAGCTCTATATGTGTTAAGAGGGTTGGTTATGCACTTCGACAGTGATTTGATTTAACTACATTTACTTTTTCTGATCTTATCTTTACAAAAATGTTATTCTGAAATCAAGTCTCTTCTAAACTTTAATCTCTTCTCAATATCTTCTCTGAAACTCTCCTCAAGTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352176 lncRNA downstream 83036 1614468 ~ 1616033 (-) True G309809
TU352172 lncRNA downstream 407062 1261954 ~ 1292007 (-) True G309805
TU351950 lncRNA downstream 563614 1096224 ~ 1135455 (-) True G309622
TU352069 lncRNA downstream 568619 1104785 ~ 1130450 (-) True G309719
TU352060 lncRNA downstream 630746 1067935 ~ 1068323 (-) True G309710
TU352300 lncRNA upstream 38202 1739018 ~ 1739223 (-) True G309928
TU352317 lncRNA upstream 124831 1825647 ~ 1825921 (-) True G309935
TU352341 lncRNA upstream 153249 1854065 ~ 1854369 (-) True G309947
TU352342 lncRNA upstream 153837 1854653 ~ 1855158 (-) True G309948
TU352316 lncRNA upstream 160920 1861736 ~ 1893780 (-) True G309934
CI01000095_01675024_01682552.mRNA mRNA downstream 16289 1673961 ~ 1682780 (-) True CI01000095_01675024_01682552
CI01000095_01639699_01643103.mRNA mRNA downstream 55743 1639585 ~ 1643326 (-) True CI01000095_01639699_01643103
CI01000095_01543090_01636658.mRNA mRNA downstream 62411 1543090 ~ 1636658 (-) True CI01000095_01543090_01636658
CI01000095_01537561_01538239.mRNA mRNA downstream 160004 1537546 ~ 1539065 (-) True CI01000095_01537561_01538239
CI01000095_01200809_01460128.mRNA mRNA downstream 238941 1200809 ~ 1460128 (-) True CI01000095_01200809_01460128
CI01000095_01747706_01752312.mRNA mRNA upstream 46890 1747706 ~ 1752312 (-) True CI01000095_01747706_01752312
CI01000095_01753866_01754199.mRNA mRNA upstream 53029 1753845 ~ 1754199 (-) True CI01000095_01753866_01754199
CI01000095_01762546_01807415.mRNA mRNA upstream 61216 1762032 ~ 1807474 (-) True CI01000095_01762546_01807415
CI01000095_01814503_01819719.mRNA mRNA upstream 113239 1814055 ~ 1819719 (-) True CI01000095_01814503_01819719
CI01000095_01821436_01824400.mRNA mRNA upstream 120394 1821210 ~ 1824414 (-) True CI01000095_01821436_01824400
TU352106 other downstream 517311 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 610903 1085588 ~ 1088166 (-) True G309626
TU352182 other upstream 962514 2663330 ~ 2731704 (-) True G309815
TU352668 other upstream 1491282 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 1830096 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU353582 other upstream 2658845 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 3448209 5149025 ~ 5154494 (-) True G311701

Expression Profile