RNA id: CI01000095_03554228_03557044.mRNA



Basic Information


Item Value
RNA id CI01000095_03554228_03557044.mRNA
length 1781
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000095_03554228_03557044
representative True

Chromosome Information


Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 3554188 ~ 3557177 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAATGTCTTTATTTTACTGGAAGTGAATAAAACTAAGCACTAAAGGTAATACAGGTTGTTGACATACCATAATAAAACATTTATGTCTGCATGTGACCAGCAGGAGATGAACATCCACTCTCAGAGCTGAGGATGGTGCTGCTGGGTTATAATGGATCTGGGAAGAGTTCAGCAGGAAACACCATCCTGGGCAAATCTGCATTTGATTGCAAAAGATCACTTACATCTATGTTTCGAGAAGGAGATGTTGCTGGAAGACACATCACTGTGGTTGATACTCCAGGCCAAAGGAGAAATTACTGTTCAAAATACACCCCCAGACTCTATAAAGATGAGGTTGTGTTGAGTCCATCTCACTGTCCTCCAGGACCTCACGTCTTTCACCTGGTCATACGAGTGGATGTTTCTTTCACTGAAGTGTACAGAAGGGCAGTGGAGGAACATGTTGCCTTTCTTGGTGCAGATGTCTGGGATCATATCATTGTTCTCTTTACCTTTAGTGACTGGTTGAGAGACACAAGCATTGAGCTGTTCATTGAGAGTGAAGGAGAAGCTCTTCAGTGGATAATAGACAAATGTGGGAACAGATATCATGTCTTTAACAACATGAACAAAGATGATGATAATCAAGTGACTGAGCTTTTGGAAAAGATAGAAGAGATGGTCGCAGGAAACAAAAGACGCTGTTTTATGATAGATCATCAGAATTTACAAGAGGTAAAAGAAAGAAGAATGAAAGTAGAGAAAAGAACAAAACAAATGAAGGCTGTAGTGCAAAAAAGAAATAAATTGAGACATTCAACATCAGGAAATGCTGAACTTTCTGAAATGACATTGGTGTTGCTTGGATCATACAGTTGCTACAAGAGTTTAACAGGGAACACAATTTTGGGTAGGATGGTGTTTAGCAGAAGAAGATCAGAAGACAATTTAAAAGAAAAAGGGGAAGTGGCCAGCAGGAATCTCACTGTGGTTTACACACCAGGTTTTGAGAAAGATTACCTTATTGGAAAAAGACTTGAAAATGCTAAGCTCAACATATTGAAAAGTGTAACAGAAGAGTCCTCAGGAATACATGCTTTCATTTTAGTCCAGAGTGTCGACTCTTCCTTTGCGGAGGAAGAGAAGAGCGCACTAGACAAAATCATGGAGCCTCTCGGTGAAAGAGTCTGGAATCACACGCTGGTTGTGTTTGCTGTTGGAGATGAACTAGGAGACACTCCCATAGAGTTATTCATAGCAAGTGAAGGTGATGCTCTCCAGGGGCTCATTGAGAAATGTGGAGGCAGATATCATGTTCTCAACAATAAGAACTGGGGTGATGGATCTCAGGTCACAGAACTGCTGGAGAAGATTGAGGAGATGGTGGAAGGAAACAGTGGACGTCATTATGAAATAGATGAAGAGACTTTGCAACGTGTGGAAGAGGAAAGGAGAGCAGAGGAAAGAAGAATGAAGAGCCAACAACTGCAATATGAAAAAGACAAGGAGAATCAAGAGAGGGTTGAAAGAACAGATCCTGTTCGCTGTGAAAGAGAACGTAGTATGGACATCCCTTTAAATATTGCTGGAGGTGGCAGTTCTTTCTCAGAAAGTTCAGCATATCAGTCCATGAGCATCTTATCCAAAGAACTACCTGGAAAGTACCATTTCAACAAGTCACTGTGTTCAGAAATGACCTCTGGATTGGAGTCTCTTGACTCTTTTCCAGTTTCTGAAGAAGAACCTGATTTAGAATAAGAGTTTAGCTTTGTATATATTATATGCAAAACCATATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU353288 lncRNA downstream 71557 3482430 ~ 3482631 (-) True G310759
TU352863 lncRNA downstream 179339 3374432 ~ 3374849 (-) True G310385
TU352862 lncRNA downstream 182182 3371806 ~ 3372006 (-) True G310384
TU352789 lncRNA downstream 316689 3236001 ~ 3237499 (-) True G310319
TU352792 lncRNA downstream 321856 3232107 ~ 3232332 (-) True G310322
TU353308 lncRNA upstream 16443 3573620 ~ 3641059 (-) True G310777
TU353314 lncRNA upstream 27200 3584377 ~ 3590766 (-) True G310782
TU353392 lncRNA upstream 325637 3882814 ~ 3882971 (-) True G310857
TU353397 lncRNA upstream 335181 3892358 ~ 3892703 (-) True G310862
TU353453 lncRNA upstream 438219 3995396 ~ 3995706 (-) True G310918
CI01000095_03544585_03545168.mRNA mRNA downstream 8781 3544451 ~ 3545407 (-) True CI01000095_03544585_03545168
CI01000095_03528759_03538412.mRNA mRNA downstream 15133 3528463 ~ 3539055 (-) False CI01000095_03528759_03538412
CI01000095_03511710_03521880.mRNA mRNA downstream 32243 3511137 ~ 3521945 (-) True CI01000095_03511710_03521880
CI01000095_03508757_03510876.mRNA mRNA downstream 43222 3508663 ~ 3510966 (-) True CI01000095_03508757_03510876
CI01000095_03485842_03499188.mRNA mRNA downstream 52263 3485804 ~ 3501925 (-) True CI01000095_03485842_03499188
CI01000095_03566220_03574202.mRNA mRNA upstream 8813 3565990 ~ 3574421 (-) True CI01000095_03566220_03574202
CI01000095_03598784_03614858.mRNA mRNA upstream 41262 3598439 ~ 3614858 (-) True CI01000095_03598784_03614858
CI01000095_03645380_03674104.mRNA mRNA upstream 88102 3645279 ~ 3674220 (-) True CI01000095_03645380_03674104
CI01000095_03720995_03743990.mRNA mRNA upstream 163376 3720553 ~ 3744162 (-) True CI01000095_03720995_03743990
CI01000095_03763628_03856780.mRNA mRNA upstream 205773 3762950 ~ 3856780 (-) True CI01000095_03763628_03856780
TU353276 other downstream 16955 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU352668 other downstream 331520 3192098 ~ 3222668 (-) False G310207
TU352182 other downstream 822484 2663330 ~ 2731704 (-) True G309815
TU352106 other downstream 2372430 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 2466022 1085588 ~ 1088166 (-) True G309626
TU353582 other upstream 802484 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 1591848 5149025 ~ 5154494 (-) True G311701
TU354344 other upstream 1626416 5183593 ~ 5187675 (-) True G311700
TU354609 other upstream 2049036 5608739 ~ 5608773 (-) False G311924
TU354610 other upstream 2049036 5608739 ~ 5608773 (-) True G311924

Expression Profile