RNA id: CI01000095_03645380_03674104.mRNA



Basic Information


Item Value
RNA id CI01000095_03645380_03674104.mRNA
length 9193
RNA type mRNA
GC content 0.48
exon number 21
gene id CI01000095_03645380_03674104
representative True

Chromosome Information


Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 3645279 ~ 3674220 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTCCCATGAAGGTAAGTAGCATTAAAGAATTATTTTCATTCATCCATATTTAATATTTTGCATTTTGAAATTTACTACTTCTTTATCAATTTGACATGTTTATTTACAGCTAATCATGGGAGCAAAACTTTTACTGGTTTTTGTGATATTTCTGTTTTGGGATGGCTGCCAGGCTCGATCTGCGGGACAAGAATTTGCCACTGCATTTATGCAAAACTATGTATCCCCTTTTGATTTGCCGCTCTTTCAGCTTTATATCACCTCTGTGAATTCTGATTGCCTGGTACAGGTCAACGTGCCTGGTCTTCGTTTCACCCAGGAGGTGCAAATGACTGCAGGTCAGAGCATCACTGTGACCCTTCCCAAAGAAGTCGAGCTGTCTGGTACCAAGAGGTCCCGCAATACTGCCCTCATTCAAGCATCCAATGACATAACGGTTTCCTCTCTAAACTCGAAACAATACACGTCGGATATGTCCCTGGTCTACCCTATGAGCGAATGGGGCACTGAATATTTTGTGTTCACCCCCACTAACTCCCCTCCATCCATGCTGAAGGAGTTTGTGCTTGTCAACGGTAAAGAGCAGAACACGGTGGAAGTGTTCCTTCGAGCGGCGGTCCGATTTGAAGGCCGCTTGTATGGTGTTGGCAGTAAACTAGCTGTGGTGATGGGTCCTTTCGAAAATGTACAAATTCAAAGCCAAGGAGACTTGACAGGAACCCGCGTTTCCTCGCAACTTCCCATCGCCGTGTACTCGGGCCACATGTGCACGTCGCGCTTCTCTAAGTGCAATCACGTTTATGAGCAACTCCTGCCGGTGCAAAGATGGGGAACTCACTTCCTGGTGGCTCCGTTTAGCATCCAGAGCCAGTTTGACAGCGTCTATATCCAGGCATCACAGTCAACGAATGTAACAGTTCAGTTTGGCCGTACTACATTAAATGATGTACTTCAGCGTGGTATGATCATAGAGTACAAAATCCAGTTTCCAGATGGTCTTAACATCATTGCTGACAGTGGAATCCAGGTGTTTTTTCTGTTTAATGGTGTGCGAACTTCCAATAATGTGCTATACGACCCGTTTCTTGTAAATCTTCTGCCCAACAACAATTTCTGTTCTTCGTACACACTTGATGGGATAGCTGGCTTTGACAACCGAGCCCTCTTGATTGTTCCGACCAATGAACAAGCAGGGATTCTTTTTGATAGCTTGTCTTTACCTGGAAAAATTCAGTGGAGGGTCATCAAAAACAGTGAGTACTCCTGGACTGAGCTGGTTTACCAACCTGGGGCAGGTGGGCACAAAGTAACCCATGCAAGTGCTTCTTTTGGGGTCTATAGTGTGGGAATAGACCAAGTGAATGGGTACGGAGCCCCAGCCCCATGCATTGATCCAGTTGTGCCTCGCTCTTGCTTCAGCATCGACTGTAGTCCGGATGAGGACTGCCAGATGATGGGTTCCTTACCCACCTGTGTGAAGAAACCATTTGGAATGTGTTGGGCTATGGGCGACCCTCACTACAGCACATTTGACCAGCGTTATTTTAACTTCATGGGCACTTGCACTTATGTTGTCACCAGGAACTGTCAGAAAAATGACAGTCTTCCAGCTTTCGAAGTCCTGGCTAAAAATGAAAACCGTGGTGACACGAGAGTCTCCTATGTGGCACTTGTAATTGTGAATATTGGTGGTATCACCATCAGAGTTGAAGGTTCTGATCCCGGAAAAGTCAGGATTGACCAGAGTGTGTGGAGCCTTCCTGTCATTCTTGATGATGTTGGAGTATCCATGTTCCAGTCTGGCAGCTTCATCACCATCCTTTTTTCTTTTGGGCTGAATGTGCAGTATGGCTATAACCACTATCTCATGGTCTCCATGCCCACTGCCTTCATGAACAAAGTCTGTGGCCTCTGTGGCAACTTTAATGGTGATCCCAATGATGATTTCATAATGCCTTCGAGCACCCAGGCTCCCAATGCGACAGTGTTTGGCCAGAGTTGGAAAGTTCACAACTTAACATGGGATGAGGGCTGTAGAGATGACAATAGAGGCCATGAATGTGATGTTCAAGCACTTAAACAATGGGAGGGTGAAAACTACTGTGGACTCTTAATGAAGGTGCCATTCAGTCAGTGTCATTCTTTTATTGACCCTGCTATTTACATTCAGAACTGCTTGTATGATGTCTGTATGGCAGATGGCCACAAAAACTACTTATGTAATGCCTTGGAGGTCTATTCGGGTGTATGTCAACATTTTGGGATACAACTAACCAACTGGAGAGAAGCAGCCAATTGCTCTTACAGATGCCCTGAAAACAGTCATTATGAATTTTGTGGTAGCGCTTGCCCTTTGACCTGCATGGGCCTCGGGGCTCATTTGAACTGCACTTTACCCTGTGTCGAAACATGCGCTTGTGATCCTGGTTTTGTTCTGAGTGGATCAAAATGTGTACACTCTGCCCAATGTGGCTGTTCCTACAATGGACGCTACGTTCCTGCCGGGGAGGCTTTCTGGGCGGATGATGCTTGCCAGCGGCTTTGTCGTTGCTCCACGGAGGGTGGAAGTCTAGAATGCCAAGATGGAGGCTGTGGGGCTGGACAGCACTGCCAGGTGGTGAATGGCATTAGGGGCTGTTATCATGTCTCCCAAAGCACCTGTATGGCACTGGGCGACCCCCACTACTACACCTTTGACGGGAAGTACTTTGACTTCCAGGGCAACTGCATGTATCAGTTGGTTGGGGTTTGTGTCTCAGATCCTGGACTGGTGCCATTTGATGTGCTAGTGCAAAATGACTTTCGGGGAAGCAGAGCGGTGACGTTCACAAAGCTACTGGAAATCAAAGTATATAATATCAGCATTGTTATCGATAGAGAATACAGCAGTTTTGTTACCGTCAGTGGTGAGCTGTTGAATCTCCCTCTCAGTCTTATTGAAGGTCAGGTTTCTGTTTTCAGAAGTGGCTGGTCTGCTGTCGTTCAAACCTCTTTTGGTCTCAGAGTCACGTTTGATTGGAACAGCTTTGCAACCGTCACCATCCCAAGCACCTACATGGGTGCCGTCTGTGGCCTCTGTGGGAACTACAATGGAAATCCAGAAGATGATCTGACCATCAGAGGAACAACATTACCTTCCTCAGGACCAGTGGAGTTTGGTGCCAGCTGGCTTGTAGCCGAGATCCCAGACTGTGTCCATGGCTGCACAGACAGTTGTCTGGATTGTGACCCGGCCAAAAAGAGTTTGTACGAGACGTCTGATTTCTGTGGGCTGCTACGTGACCCACAGGGGCCATTCAACGACTGTCAAATCGTGCTGAACCCTGCTCCATTTTTTGAGGATTGTGTTTACGACGTCTGCTTGTATAACGGAAGGAGAGATATACTGTGCCAGTCCATAACGGCATATGTATCTGCCTGTCAGGCGATGGGAAAGACCATCAGCCCCTGGAGAACTGCTGAATTCTGTGGTGTTCAGTGTCCTGTTCACAGCCACTATGAGCTCTGTGGTTCTGGTTGTGAAGTCACATGTCATAGTTTGGCTCCTCCCACTGACTGTCGTAGCCGCTGTACGGAGGGCTGTGTGTGTGACCAGGGCTACATCAGGAGTGGCGACCGCTGCGTCCCCCTCTCTCAGTGTGGCTGTCTCTATGGCAACCGCTACTACTTGCTTTACCAACAGTTCTATCCTGGCAATAACTGTGAGGAGGTGTGCACATGTTCAGCGGATGGCCAGGTGGTCTGTAAGAAGTTATCTTGTGGCCCCTATGAGAAGTGTGAGCTGGTGGATGGCGTTCGCAGATGCCAGCCAATCGGCAACGCTGTTTGTGAAGCTGCTGGAGACCCACACTATACGTCCTTTGACGGGAAGCACTTTGATTTTCAGGGCACCTGTACATACGTCCTGTCCCAATCCTGTGGCCTTGAAAGGACCAGCCTGACCCCTTTCTCTATCCAGGTGGAGAATGAGAGATGGTGGCCCAGTAGCATAGTCACTGTTACCAAGCAAGTGGCCTTAACCGTCTATGGCAGCACCCTGATCATAAGACAAAACGAGCCCCAGATCTTGGTCAATGGGGTTTTGACTAACATCCCATACAGTTCAAACAGTTTAAATGGCTCCTTGGTCCAGGCCTATAATGACGGTAGTAACTACATCATCAAGACCGGCTTTGGCCTCCAGGTGACCTATGATCGGGTTTACAGAGTCACTGCTACCGTCCCTGGCAACTACCGTGGCAAGACCTGCGGACTCTGCGGTAACTTTGACGGAGATTCTTCTAATGACTTCCGTCTTCCAGATGGCAATATTACACAGGACGTGAATGTATTTGGAAGAGCCTGGAAAGTGGACGTCCCTGGAGCAGTTTGTGGGGACGGATGTGAAAGCGGCACATGTCTGGACTGTGATCCCAGACTGAAAGCCATATTTGAGAAGTATCCCTACTGTGGAGTTCTGATTGACCCCAGTGGACCATTTGCCACCTGTCATGCTGTGCTGAACCCTTCAGATTATATGAGAGACTGTGTCTTTGATACGTGCGTGTCTGGCGGCAGCAGCAAGGTGGTTTGCGACAGTGTGGCGAGATACGCTTTTAGATGCCTTGCAGCTGGAGTCCTTATCCAAAAATGGAGGACAGATTCTTTCTGCCCAATGCCGTGTCCTGCCCACAGCCATTATGAGCTGTGTGCAGACGTCTGCTCTGCTGCCTGTCCTGGGCTCACTAACATAATCCAGTGTCCTCAAACCTGCACTGAGGGCTGTGCTTGTGACAGTGGTTATCTTTTTGATAGCCAGCAGTGTGTTGAACACCAGCAATGTGGATGCTATGAGCAGGGACGCACGTTTAAGGCTGGGGAGGTGGTTTACCTGGACCAGTGTGAGCAGAAGTGTCAATGTGATCCAGGGAAGGGAGTTTCCTGTGAGAGAGTCAACTGTCCCAACGACACACAGTGTTTACTGAGAGCGGGAGTGTGGGCCTGCTATCACTTAGATCCATGTCAAGACATCCACTGTCGAGAGAAAGAGACATGCCGCTTTGAAAATGGCAAGGCCGTGTGTGCGCCCCTGTACAACAGGACCTGCTGGGCATGGGGTGATCCGCACTACCACACCTTTGATGGCTATTACTTTGACTTCCAGGGCACCTGCAGATACGTCTTGTCTGAGACCTGTGGGAATCTGAGCGGACTGGCGCCCTTCTCTGTGAAACAAAGCAATGAAAACCGTGGCAACCCTGATGTGTCTTATGTGCGGGAGGTGGAGGTTATTGTACATGGCAACACACTTACTGTGGTGAACCATCAGAAGGGACAGATCATGGTGGATGGTTTGGTGTTTAATCTTCCACTTGATCTTCATGATGGCCGTGTGAGGGTGCGAGAGAGTGGTAATGCTGTGTTTTTGGAAACTGATTTTGGCCTGCGCGTCTCTTATGACTGGGATTCAAGGGTCGACCTGCAGCTGCCTAGCAGTTACTATGGAGTTGTGTGTGGCCTGTGTGGAAATTTCAATGGTAATGCTGGAGATGAGCTGAGAAACCCTGCTGGAAACCTACTGCCAAGTTTGTACCAGTGGGCCAAGAGCTGGAGAGCAGAAGACAATGTCACATCTGCATGCCATGATGGCTGTGAGAACGGCTGTCCTGTTTGTGCTCCTCACATTCGTGCCCTGTATGAAACAGACGATTTCTGTGGTGTCCTGACTTCTACAGGTCTGAGTGTCTTTAATGCATGTTATGCTAAAGTGAACCCACAGGCCTTCCAGCAAAGCTGTGTGTATGACCTGTGCTTCAGTAACGGAGACCGAAGAATTCTCTGCCAGGCTCTGGAGACCTACGTCGCTCGGTGTCGACAAGAGGGCGTCATTATTACAGATTGGAGAGAGAAATTCAATTGCTCTATGAGCTGCCCACCGAACAGTCATTATGAGGCCTGTGCGTCTCCGTGTCCAGTAACATGTCCGTACCCAGATCAGCAGCATTATTGCACTGACACCTGTGTGGAAGCCTGTGTTTGTGACAGCGGTTTTGTCCTCAGTGCTGGCGCTTGTGTGCCCACCAATCAATGTGGCTGTTCTTTCGAAGGCGCCTACTACCAGCAAGGCCAAACGTTCTGGGCAGATGATCAATGTCATCGGCTTTGTGAGTGTGACCGTAACTTGAGAGTCGTGGTGTGTCGTGAATCTTCCTGCGCCTCTGGTGAGAGTTGCTCAGTTGTTAATGGAAGTCGCGGCTGTCAGCCAATGAGCTCTGCTGTATGTGTAGCTTCAGGAGACCCACATTACCACACATTCGACGGACTTCGTTTTGACTTCCAGGGAACATGCGTGTATCAGTTGGCAGCCCTGTGCATTGATAAAGAGGCTCTTGTACCTTTTAATGTGACCGTTCAGAATGAACATCGTTGGAGCAGAGAAGTGAGCTTCACTAAAACTGTCAATGTGTCTGTGAATAGATTCACCATCACGATGACCAGAGAACATCCGTATCAAATACTGTTTGATGGCCAGTTAGCAGAACTTCCCTTTTTGATGCAAGATGTGTTTATAGTTTTCCGCAGTGGTAACACTGCTGTGTTGAAGACAAACTTTGGTCTCCAGGTGACCTTTGACTGGTCCAGTGTGGTGAGGGTCACTTTGTCTAACAATTACAGCGGTGCGGTGTGTGGCCTTTGTGGGAACTTCAATGGTGTGGTTCAGGATGATCTTGCAATGCGCAATGGTATCATGGCACCCAATGCCAGTAGTCTGGGACAGAGCTGGCAGGTTGCCGCAACACCTGAATGTTCATCAGCTGGTTGCCTTGGCATTGGATGCTCAACCTGCCCTGCAACCCAGAGGGAGAACGCCCGACGCTATTGTGAGATTATCACAAACCAGACAGGACCTTTCAGAGAATGTCACGCCCAGATTGACCCCGGATCTTACGTAGAGGATTGCATATTCGACACCTGCCACTTCCAAGGACATCAGGCTGTGTTGTGTGACGCAGTGGCAGCCTATGCTTCTGCATGTCAGAGTCAAAGTGTCACAGTTCACCCGTGGAGAAATGCTACTTTCTGCCCTCCTTCCTGCCCACCCAACAGCCACTACAACCTCTGTGCTCCAGGCTGTACTGAGACCTGCGTTAATCTCTCTGAGCTCAACTGCAGCAGACCCTGTGCTGAGGCCTGCCAGTGTGATCATGGGTACATCTTGAGTGGCCAAACCTGTGTGCCACAAGCAGAATGTGGCTGCTTCTATCAGGGACGTTATTACAACCAACACCAGATGTTTTACGTACATGAGCAGTGCTTGGAGCTCTGCAGGTGTGGAGAAAATGGAACCGTTTCCTGCCAGACATCAAGTTGTGGGCCAGGAGAAGCTTGCAGGGTGGTGAATGGAGTATTAGGATGCCACCCTGTCAGTTACGGAAGATGTGTGGCCACTGGTGACCCTCACTATTTTTCTTTCGATGGCAGGAGGTTTGACTTTCAAGGTGCATGTGCTTATACACTTGCTAAGGTGTGTGATCAGATCGGAGGACGGCTGATTAATTTTTCTGTGGACACCACGAATGAGCAGATTGGAAACATAGGGGTTTCTGTCATCAAGAACGTGACTGTGACTGTCTACAACTTGACAATTACCATCAGACGAGGTGAACGCTGGAGAGTCATCGTAAACAATGAGTTTGTCAACCTCCCTTCATCGCTTGGCCATGAAGTCACCATTAACCAGGTTGGTTTCACTGTGATAGTGCAAACTGATTTCGGCTTGAGAGTTCTATATGATGCCAGTTACCATGCAGAAGTCCATGTACCCTCAAACTATCAAGGCAGAATATGTGGCCTGTGTGGCAACTACAATGGCAACCCAGCTGATGACTTCTTGTTGCCCAATGGGACCCAAAGCTCCAGTGTAGATGCGTTCGGACAGGCATGGGCATTGCCGGAAAATGGTGTTCAGTGCCGAGGCGGAGGTTCCCAGAAGCAGTGCACTGAGACAGAAGCTGAGAGATACAGCAGAGATGATGCCTGTGGCCTTATGGCAACTGCCGCTGGTCCTTTCAGTGCTTGTCATGGTTGGGTGAATCCTCAGCCCCATGTGATTAACTGTGTATTTGACATGTGTATTATGGATGGAGATAGAGCTATACTATGTCAAAATCTTCAGGCTTATGCCATTATCTGCCAACAAGCAGGGATACAAATCATGCCATGGAGAAATATTTCATTCTGCCCGGCCGATTGTCCAGCTAACAGTCACTATGTACAGTGCTCTAATAACTGTGCCAACACCTGTGCCAGCCTTAGTGGGTCCGTTAACAACTGCCCATATATTTGCACGGAAGGCTGTCAGTGTGATGAAGGTTTGCTCTCAGATGGTGATAAGTGTGTGTCTGTGGGAGACTGCGGATGTGTCCATAATGGCAAATATCTAAAGGTTGGGGAAGTCTCACTGACTGACGACATGAAGTGTGTGTGTCATTTCGCCGGGGTGCTGGAGTGTGTGAAACAAGCCTGTGCCACAGGAGATAACTGTGATGTTCAGGATGGCAAACAAGATGGTTACCCTGAGCAAGGCCACTGTGTATTTGATACAGATGACCAGTTGCTGTCATTTGATGGTGTAAAGGGGACGGTTGGCCGGCCAGGGGCCTTTCAAATGGCTTTCTTATGTGATCAAGAGTCTCCTGACTGGTTCCGTGTGGTGTTAGATGCACTTGCATGTGCCAGGAATGATCCTAGTAATGTGACAATGGTCCACGTCTTCTTCCAGGACATGATCATCACAGTCAACAATCGCCAACACAGCTGGGTGAATGGAAAGAAGGTCTCGTATCCATTTATGCCTAAAGACGGGGTGTCAATCTCATACAGTAATGAGGCTGTCGTCATTGAGAAGATGTCTACCATGAGACTGACTTACTCTGTCACTGAAGGAGTCGTGTTATCCGTAAACAGAGACCTGACACACAAAGTTTGTGGCGCCTGTGGCAACTTTAATGGAGACGCTGCAGATGATATGAGAACTTCTGATGGGAGAAACTCCACTATGGTGTCTCTGGTTGTATCATCCTGGCAGGCTGAAGACTTCTTTACATGGTAAATACTTGATGTATTATTTTTGACAAATGACAAAATATGCTAGTTTAGTCACATTAAAGCCTATAATTGTGCTGCCTTCATCAATGGACATTGCAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU353308 lncRNA downstream 4220 3573620 ~ 3641059 (-) True G310777
TU353314 lncRNA downstream 54513 3584377 ~ 3590766 (-) True G310782
TU353288 lncRNA downstream 162648 3482430 ~ 3482631 (-) True G310759
TU352863 lncRNA downstream 270430 3374432 ~ 3374849 (-) True G310385
TU352862 lncRNA downstream 273273 3371806 ~ 3372006 (-) True G310384
TU353392 lncRNA upstream 208594 3882814 ~ 3882971 (-) True G310857
TU353397 lncRNA upstream 218138 3892358 ~ 3892703 (-) True G310862
TU353453 lncRNA upstream 321176 3995396 ~ 3995706 (-) True G310918
TU353419 lncRNA upstream 373416 4047636 ~ 4049370 (-) True G310884
TU353516 lncRNA upstream 431883 4106103 ~ 4108125 (-) True G310976
CI01000095_03598784_03614858.mRNA mRNA downstream 30421 3598439 ~ 3614858 (-) True CI01000095_03598784_03614858
CI01000095_03566220_03574202.mRNA mRNA downstream 70858 3565990 ~ 3574421 (-) True CI01000095_03566220_03574202
CI01000095_03554228_03557044.mRNA mRNA downstream 88102 3554188 ~ 3557177 (-) True CI01000095_03554228_03557044
CI01000095_03544585_03545168.mRNA mRNA downstream 99872 3544451 ~ 3545407 (-) True CI01000095_03544585_03545168
CI01000095_03528759_03538412.mRNA mRNA downstream 106224 3528463 ~ 3539055 (-) False CI01000095_03528759_03538412
CI01000095_03720995_03743990.mRNA mRNA upstream 46333 3720553 ~ 3744162 (-) True CI01000095_03720995_03743990
CI01000095_03763628_03856780.mRNA mRNA upstream 88730 3762950 ~ 3856780 (-) True CI01000095_03763628_03856780
CI01000095_03937755_03971616.mRNA mRNA upstream 261797 3936017 ~ 3972420 (-) True CI01000095_03937755_03971616
CI01000095_04055806_04081892.mRNA mRNA upstream 381342 4055562 ~ 4081892 (-) True CI01000095_04055806_04081892
CI01000095_04255180_04256500.mRNA mRNA upstream 580909 4255129 ~ 4256500 (-) True CI01000095_04255180_04256500
TU353276 other downstream 108046 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU352668 other downstream 422611 3192098 ~ 3222668 (-) False G310207
TU352182 other downstream 913575 2663330 ~ 2731704 (-) True G309815
TU352106 other downstream 2463521 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 2557113 1085588 ~ 1088166 (-) True G309626
TU353582 other upstream 685441 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 1474805 5149025 ~ 5154494 (-) True G311701
TU354344 other upstream 1509373 5183593 ~ 5187675 (-) True G311700
TU354609 other upstream 1931993 5608739 ~ 5608773 (-) False G311924
TU354610 other upstream 1931993 5608739 ~ 5608773 (-) True G311924

Expression Profile