RNA id: TU354610


Basic Information

Item Value
RNA id TU354610
length 35
RNA type TUCP
GC content 0.45
exon number 1
gene id G311924
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 5608739 ~ 5608773 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTAAAGGCACACCAGTCACACTCTGAAAAATAAGAGTCCAGTCCAGCATGGGTGTACGGGCACAAGTTCTTTTCTGCTGGCTTCAGGTTATTTGTGCTGTCGTGTTTGGTGATGTTTGGAAGGTGCAGATAGAGTCTGAAATGGAGGCTCTGGTCTCATCTTGTGTCGTGTTGCCCTGTTCATTCAAATACCCTGCTCAACAACAGCCCTCCAGTCGTATTAAAGGCATGTGGCACATGAAGAACAACAGGGAGCATTTCATCTATCACAATGATCCTACAAGGGTTCTAGAAAATTTCAAGGGTCGTACAAAACTGACTGGGTCACTTGGTGATTTAAACTGCTCCTTGGAGATTGATGAAGTCAAAAACCATGACAATGGCCCGTATTGTTTCAGGGTAGAATTAGAGACATCTAAAATAGACAAATACTCCTTTGTGGATAACTGTGTGACAATTAATATGATTGAGCAAGCATCAAAACCAGTGATGCAGGCTGAGACGGCTGTGCAAGAGGGTCAACCCGCAGTCTTCAAATGCTCTGTCCGGCACACCTGTCCGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354582 lncRNA downstream 6520 5547904 ~ 5599693 (-) True G311903
TU354600 lncRNA downstream 27016 5578523 ~ 5579197 (-) True G311919
TU354580 lncRNA downstream 60116 5545874 ~ 5546097 (-) True G311902
TU354327 lncRNA downstream 96369 5506809 ~ 5509844 (-) True G311684
TU354573 lncRNA downstream 103146 5502848 ~ 5503067 (-) True G311895
TU354643 lncRNA upstream 5594 5614367 ~ 5616738 (-) True G311939
TU354647 lncRNA upstream 18417 5627190 ~ 5627429 (-) True G311943
TU354649 lncRNA upstream 20951 5629724 ~ 5630164 (-) True G311945
TU354650 lncRNA upstream 21684 5630457 ~ 5630782 (-) True G311946
TU354626 lncRNA upstream 30538 5639311 ~ 5669977 (-) False CI01000095_05637467_05689858
CI01000095_05587464_05588898.mRNA mRNA downstream 16469 5587421 ~ 5589744 (-) True CI01000095_05587464_05588898
CI01000095_05555392_05575055.mRNA mRNA downstream 31146 5555088 ~ 5575067 (-) True CI01000095_05555392_05575055
CI01000095_05538915_05541548.mRNA mRNA downstream 62896 5538607 ~ 5543317 (-) True CI01000095_05538915_05541548
CI01000095_05378348_05413679.mRNA mRNA downstream 192534 5377026 ~ 5413679 (-) True CI01000095_05378348_05413679
CI01000095_05357475_05373425.mRNA mRNA downstream 232788 5355914 ~ 5373425 (-) True CI01000095_05357475_05373425
CI01000095_05637467_05689858.mRNA mRNA upstream 28635 5637408 ~ 5689858 (-) False CI01000095_05637467_05689858
CI01000095_05731171_05739796.mRNA mRNA upstream 121614 5730387 ~ 5742070 (-) True CI01000095_05731171_05739796
CI01000095_05878357_05879271.mRNA mRNA upstream 269372 5878145 ~ 5879765 (-) True CI01000095_05878357_05879271
CI01000095_05885040_05886552.mRNA mRNA upstream 275941 5884714 ~ 5886555 (-) True CI01000095_05885040_05886552
CI01000095_06364435_06391469.mRNA mRNA upstream 755245 6364018 ~ 6391469 (-) True CI01000095_06364435_06391469
TU354344 other downstream 368979 5183593 ~ 5187675 (-) True G311700
TU354345 other downstream 451719 5149025 ~ 5154494 (-) True G311701
TU353582 other downstream 1243587 4359661 ~ 4362626 (-) True G311036
TU353276 other downstream 2068980 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU352668 other downstream 2383545 3192098 ~ 3222668 (-) False G310207
TU355084 other upstream 625612 6234385 ~ 6237845 (-) True G312335
TU355119 other upstream 670820 6279593 ~ 6280086 (-) False G312368
TU355125 other upstream 670820 6279593 ~ 6280028 (-) True G312368
TU355147 other upstream 804319 6413092 ~ 6414658 (-) True G312388
TU355146 other upstream 828659 6437432 ~ 6440801 (-) True CI01000095_06438476_06449339

Expression Profile