RNA id: CI01000095_05885040_05886552.mRNA



Basic Information


Item Value
RNA id CI01000095_05885040_05886552.mRNA
length 1388
RNA type mRNA
GC content 0.37
exon number 4
gene id CI01000095_05885040_05886552
representative True

Chromosome Information


Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 5884714 ~ 5886555 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTATGACCAAGACCCAGATGAATGAAGATGAAGAGGAACATAAGAAGGACTTATTCAGCTGCAGTAAAACACAAACAAGACCAAAAATCCTGAATCATCCATTTGGCATCTATTTTGTTGAAGAAGATACTGCAAGAGTTTCACTGGAGATGGACACATCTTCATTCTATCCTTTATATGGCAGCGCTCTTCACAATGGCAGTGTTGGGCCTAACTCTGATGCTTCTAATCGAAGCATGAACAATACAGATGACAATAAATCCTTCATAAATGGAGACATTATTTATGTTTCAATCATTGCTAGCATTGAAATTCCCATAATTTGTTTGGCTATTTATGCTGTTTATTTTCTCATCAAATCCAGTCAAGCCGCTCCAGTTTTTGTCATTAATCTGCTTATTTCAGATCTCATACAGATTGTTTGCATGTTACTCTTCACCATTCCTTTAAAATGGATGACTATCATCTTAATGAGATCAATATTCTGGGCTGGTTTCACAGGTTCTTATTTCATGACATGCATAGCCGTAGAGAGATACGTTATGATCGCTCATCCCGTTTGGCACAGGTCTCATCGCTCAGTCAAATGTCTTGTTTGTACTTCACTGACTGGTTGGATTGTATCTTTTATTGTTTTTCCAATGATCTATATAGAAACACACCTATTATTTTTCATGCAGTTCATCTTCTATCCAGTGATCATTTTGTGTTTTGTAGGTATGTGCAGGTCCCTCTCTCGCTCAAAATCTCTAACTCCTCTAAAGAAGCAGTTAGTTCTGGCTCCTCTGTTATTTGTGGTAATAAGTTACACCTTTCTAATCCTCCCAGTTAATATCTTATTTATTGTCTATATTAAATTGGATAAGTCCCTAGGTAGTCTGGTGGATTTTACTGTTGTTCTTTATCTGTTAAACCCGCTTGTGGACTGTTTGCTGTATGTGTTCATGAGGAGTGACTCTGAGAACATCATCAGGACGCATCACTGCTGCACCAGACTGAAGAGAGTTCAGAGTGAAACGAGACACACAACATCTGTTGATATACAGCATGATCATGTGTGAGAGATTCACACCAGACCACTGATGTCAGCAACTAATTCATGAATGTACTGTAATAGCTCACAAATAGCACATTACAGCATGTTTAACTGGATGAAATGTCACATATATTTGTATACATCTTGTAGTGCGTTTCATGAATGAAATGGTGTCCTTAAATTGTGTTATTGTGCTTTATGTCTGTATATCACTGGTAATGCTGTTACAAAATGTAGCTTCAGTATGGTTATTATACTTGTACTTGAAAATGATCTAGTCATATCGATCTTAAAGTTGTCAGAAACTCAATGTGAATTGCTAATACCACATTTTACTAACAGAGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU354760 lncRNA downstream 17633 5866805 ~ 5867081 (-) True G312043
TU354741 lncRNA downstream 37508 5846943 ~ 5847206 (-) True G312030
TU354635 lncRNA downstream 113251 5766790 ~ 5771463 (-) True G311933
TU354619 lncRNA downstream 154821 5715087 ~ 5729893 (-) True G311928
TU354691 lncRNA downstream 175102 5709411 ~ 5709612 (-) True G311980
TU354791 lncRNA upstream 25228 5911783 ~ 5912087 (-) True G312068
TU354793 lncRNA upstream 27026 5913581 ~ 5913780 (-) True G312070
TU355011 lncRNA upstream 91011 5977566 ~ 5977777 (-) True G312267
TU355013 lncRNA upstream 102119 5988674 ~ 5989048 (-) True G312269
TU355021 lncRNA upstream 119062 6005617 ~ 6005868 (-) True G312277
CI01000095_05878357_05879271.mRNA mRNA downstream 4949 5878145 ~ 5879765 (-) True CI01000095_05878357_05879271
CI01000095_05731171_05739796.mRNA mRNA downstream 142644 5730387 ~ 5742070 (-) True CI01000095_05731171_05739796
CI01000095_05637467_05689858.mRNA mRNA downstream 194856 5637408 ~ 5689858 (-) False CI01000095_05637467_05689858
CI01000095_05604829_05607020.mRNA mRNA downstream 277694 5603542 ~ 5607020 (-) False CI01000095_05604829_05607020
CI01000095_05587464_05588898.mRNA mRNA downstream 294970 5587421 ~ 5589744 (-) True CI01000095_05587464_05588898
CI01000095_06364435_06391469.mRNA mRNA upstream 477463 6364018 ~ 6391469 (-) True CI01000095_06364435_06391469
CI01000095_06406333_06406512.mRNA mRNA upstream 519063 6405618 ~ 6407728 (-) False CI01000095_06406333_06406512
CI01000095_06414966_06435096.mRNA mRNA upstream 528411 6414966 ~ 6435359 (-) False CI01000095_06414966_06435096
CI01000095_06438476_06449339.mRNA mRNA upstream 551027 6437582 ~ 6449342 (-) False CI01000095_06438476_06449339
TU354609 other downstream 275941 5608739 ~ 5608773 (-) False G311924
TU354610 other downstream 275941 5608739 ~ 5608773 (-) True G311924
TU354344 other downstream 647480 5183593 ~ 5187675 (-) True G311700
TU354345 other downstream 730220 5149025 ~ 5154494 (-) True G311701
TU353582 other downstream 1522088 4359661 ~ 4362626 (-) True G311036
TU355084 other upstream 347830 6234385 ~ 6237845 (-) True G312335
TU355119 other upstream 393038 6279593 ~ 6280086 (-) False G312368
TU355125 other upstream 393038 6279593 ~ 6280028 (-) True G312368
TU355147 other upstream 526537 6413092 ~ 6414658 (-) True G312388
TU355146 other upstream 550877 6437432 ~ 6440801 (-) True CI01000095_06438476_06449339

Expression Profile