RNA id: TU351880



Basic Information


Item Value
RNA id TU351880
length 213
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G309558
representative True

Chromosome Information


Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 715373 ~ 715585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGGTCTTTTAAAAAAGTTGTACTTTCCTCCATAATTTCTAGTCTGGGACTAGAGATACCAAGATGCAGACTTCACTTGGGAAATAGTTTGTGACCAGAAAACCATTGTCTCTTGCTTGTTTACTTAAAGCAATTAACATGTTTTTGCTTGATTTTGTGGTTGTTTCAGAAGAAATGCCACCCACAGCCCTATATAAGCTTGCATGTTGTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU351777 lncRNA downstream 122418 533648 ~ 592955 (-) True G309472
TU351799 lncRNA downstream 131180 583503 ~ 584193 (-) True G309487
TU351785 lncRNA downstream 138056 563688 ~ 577317 (-) True G309476
TU351776 lncRNA downstream 182326 532826 ~ 533047 (-) True G309471
TU351773 lncRNA downstream 185971 529165 ~ 529402 (-) True G309468
TU351894 lncRNA upstream 31193 746778 ~ 751608 (-) True G309572
TU351927 lncRNA upstream 103769 819354 ~ 819581 (-) True G309601
TU352003 lncRNA upstream 193674 909259 ~ 927787 (-) False G309656
TU352002 lncRNA upstream 193967 909552 ~ 927787 (-) False G309656
TU352006 lncRNA upstream 193967 909552 ~ 927787 (-) True G309656
CI01000095_00219520_00237347.mRNA mRNA downstream 477941 219436 ~ 237432 (-) True CI01000095_00219520_00237347
CI01000095_00183587_00185442.mRNA mRNA downstream 528468 183219 ~ 186905 (-) True CI01000095_00183587_00185442
CI01000095_00173095_00181309.mRNA mRNA downstream 534064 173095 ~ 181309 (-) True CI01000095_00173095_00181309
CI01000095_00170941_00172566.mRNA mRNA downstream 542807 170941 ~ 172566 (-) True CI01000095_00170941_00172566
CI01000095_00166019_00170944.mRNA mRNA downstream 544429 166019 ~ 170944 (-) True CI01000095_00166019_00170944
CI01000095_00790125_00813901.mRNA mRNA upstream 73877 789462 ~ 814216 (-) True CI01000095_00790125_00813901
CI01000095_00914578_00997684.mRNA mRNA upstream 198993 914578 ~ 997684 (-) True CI01000095_00914578_00997684
CI01000095_01200809_01460128.mRNA mRNA upstream 485224 1200809 ~ 1460128 (-) True CI01000095_01200809_01460128
CI01000095_01537561_01538239.mRNA mRNA upstream 821961 1537546 ~ 1539065 (-) True CI01000095_01537561_01538239
CI01000095_01543090_01636658.mRNA mRNA upstream 827505 1543090 ~ 1636658 (-) True CI01000095_01543090_01636658
TU351957 other upstream 370003 1085588 ~ 1088166 (-) True G309626
TU352106 other upstream 463012 1178597 ~ 1181758 (-) True G309753
TU352182 other upstream 1947745 2663330 ~ 2731704 (-) True G309815
TU352668 other upstream 2476513 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 2815327 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412

Expression Profile