RNA id: TU352002



Basic Information


Item Value
RNA id TU352002
length 196
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G309656
representative False

Chromosome Information


Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 909259 ~ 927787 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


NNTGCATACGTCTGTGCGTAGTGGTTCTTGAAGCACTGACTCCAGCTGCAGTCCACTCTTTGTGAATCTCCCCCACAGTTTTGAATGGGTTTTGTTTCACAATCCTCTCCAGGGTGCGGTTATCCCTATTGCTTGTACACTTTTTTCTACCACATCTTTTCCTTCCCTTCGCCTCTCTATTAATGTGCTTGGACGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU351927 lncRNA downstream 89971 819354 ~ 819581 (-) True G309601
TU351894 lncRNA downstream 157944 746778 ~ 751608 (-) True G309572
TU351880 lncRNA downstream 193967 715373 ~ 715585 (-) True G309558
TU351799 lncRNA downstream 325359 583503 ~ 584193 (-) True G309487
TU351785 lncRNA downstream 332235 563688 ~ 577317 (-) True G309476
TU352012 lncRNA upstream 9486 937273 ~ 938107 (-) True G309662
TU352042 lncRNA upstream 97875 1025662 ~ 1025899 (-) True G309692
TU352034 lncRNA upstream 136393 1064180 ~ 1064747 (-) True G309684
TU352060 lncRNA upstream 140148 1067935 ~ 1068323 (-) True G309710
TU351950 lncRNA upstream 168437 1096224 ~ 1135455 (-) True G309622
CI01000095_00790125_00813901.mRNA mRNA downstream 95336 789462 ~ 814216 (-) True CI01000095_00790125_00813901
CI01000095_00219520_00237347.mRNA mRNA downstream 672120 219436 ~ 237432 (-) True CI01000095_00219520_00237347
CI01000095_00183587_00185442.mRNA mRNA downstream 722647 183219 ~ 186905 (-) True CI01000095_00183587_00185442
CI01000095_00173095_00181309.mRNA mRNA downstream 728243 173095 ~ 181309 (-) True CI01000095_00173095_00181309
CI01000095_00170941_00172566.mRNA mRNA downstream 736986 170941 ~ 172566 (-) True CI01000095_00170941_00172566
CI01000095_01200809_01460128.mRNA mRNA upstream 273022 1200809 ~ 1460128 (-) True CI01000095_01200809_01460128
CI01000095_01537561_01538239.mRNA mRNA upstream 609759 1537546 ~ 1539065 (-) True CI01000095_01537561_01538239
CI01000095_01543090_01636658.mRNA mRNA upstream 615303 1543090 ~ 1636658 (-) True CI01000095_01543090_01636658
CI01000095_01639699_01643103.mRNA mRNA upstream 711798 1639585 ~ 1643326 (-) True CI01000095_01639699_01643103
CI01000095_01675024_01682552.mRNA mRNA upstream 746174 1673961 ~ 1682780 (-) True CI01000095_01675024_01682552
TU351957 other upstream 157801 1085588 ~ 1088166 (-) True G309626
TU352106 other upstream 250810 1178597 ~ 1181758 (-) True G309753
TU352182 other upstream 1735543 2663330 ~ 2731704 (-) True G309815
TU352668 other upstream 2264311 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 2603125 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412

Expression Profile