RNA id: TU352012


Basic Information

Item Value
RNA id TU352012
length 543
lncRNA type intronic
GC content 0.43
exon number 2
gene id G309662
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 937273 ~ 938107 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGGCCCAAGCCCTGGCGCCACCTCCACCCTGGTGGCTTAAGGAAATCTGTGCATGGCGGGCAACATACAATCTTAATTTAATTTAAATCAAACAATGATTTTACACAGTATGAGGCACTTCCTGTTTCCCTTTAATCCCTAATGGCAACACTGTAGAAGATATTCTATAATCGTTCGCAATTTAGCGCAATTTATCTTCGGTGTCTTTGTTTCATATTGACCGAGTTTGGTGGCGATTGCATGATTCTCCTACGAGGAGTACTTGATAACTCAGAGCCTAATTATTCAAGAAATCCACATTCAAACCAAAATATCTGACTTCCTGTTGGTTGGAGCTAATGACTGTAAATTAGAAAGTTGTCCAGCCTGATGAGAACAATATATGTACTGAGTTTGGTGACTGTAGGTAAGACAAACCCCCCAACTTTTGTCAAAAAGTGCCGCTACAGTGCCCCTCCTCCCCACCCATTTCTAAGGCTTTGCCCATGTCTACTGGCCGAGCTGATGAACGATAATAACAATGACGGCCAATCAGAATCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352007 lncRNA downstream 7506 910338 ~ 929767 (-) True G309657
TU352003 lncRNA downstream 9486 909259 ~ 927787 (-) False G309656
TU352002 lncRNA downstream 9486 909552 ~ 927787 (-) False G309656
TU352006 lncRNA downstream 9486 909552 ~ 927787 (-) True G309656
TU351927 lncRNA downstream 117692 819354 ~ 819581 (-) True G309601
TU352042 lncRNA upstream 87555 1025662 ~ 1025899 (-) True G309692
TU352034 lncRNA upstream 126073 1064180 ~ 1064747 (-) True G309684
TU352060 lncRNA upstream 129828 1067935 ~ 1068323 (-) True G309710
TU351950 lncRNA upstream 158117 1096224 ~ 1135455 (-) True G309622
TU352069 lncRNA upstream 166678 1104785 ~ 1130450 (-) True G309719
CI01000095_00790125_00813901.mRNA mRNA downstream 123057 789462 ~ 814216 (-) True CI01000095_00790125_00813901
CI01000095_00219520_00237347.mRNA mRNA downstream 699841 219436 ~ 237432 (-) True CI01000095_00219520_00237347
CI01000095_00183587_00185442.mRNA mRNA downstream 750368 183219 ~ 186905 (-) True CI01000095_00183587_00185442
CI01000095_00173095_00181309.mRNA mRNA downstream 755964 173095 ~ 181309 (-) True CI01000095_00173095_00181309
CI01000095_00170941_00172566.mRNA mRNA downstream 764707 170941 ~ 172566 (-) True CI01000095_00170941_00172566
CI01000095_01200809_01460128.mRNA mRNA upstream 262702 1200809 ~ 1460128 (-) True CI01000095_01200809_01460128
CI01000095_01537561_01538239.mRNA mRNA upstream 599439 1537546 ~ 1539065 (-) True CI01000095_01537561_01538239
CI01000095_01543090_01636658.mRNA mRNA upstream 604983 1543090 ~ 1636658 (-) True CI01000095_01543090_01636658
CI01000095_01639699_01643103.mRNA mRNA upstream 701478 1639585 ~ 1643326 (-) True CI01000095_01639699_01643103
CI01000095_01675024_01682552.mRNA mRNA upstream 735854 1673961 ~ 1682780 (-) True CI01000095_01675024_01682552
TU351957 other upstream 147481 1085588 ~ 1088166 (-) True G309626
TU352106 other upstream 240490 1178597 ~ 1181758 (-) True G309753
TU352182 other upstream 1725223 2663330 ~ 2731704 (-) True G309815
TU352668 other upstream 2253991 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 2592805 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412

Expression Profile