RNA id: TU351950


Basic Information

Item Value
RNA id TU351950
length 235
lncRNA type antisense_over
GC content 0.26
exon number 2
gene id G309622
representative True

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 1096224 ~ 1135455 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTAAATGTTTAATTTATTATGTCAGATAGGCTATTAGATTCTGTCATTGAGCAAACCTACACTTGTGGTTAAACTTTAAACTGTTTATACTGTCAGTACATTGAAATGAGACATTTTGTAAAGACACACATAGAATGAACAAGTTTGTTAATGCTTACAGTGAGATGTTATAATAACAGATCAAAGTAATATTTATATCTTTATCTATAGTCTAGTTTTTTTTTTTTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352060 lncRNA downstream 27901 1067935 ~ 1068323 (-) True G309710
TU352034 lncRNA downstream 31477 1064180 ~ 1064747 (-) True G309684
TU352042 lncRNA downstream 70325 1025662 ~ 1025899 (-) True G309692
TU352012 lncRNA downstream 158117 937273 ~ 938107 (-) True G309662
TU352007 lncRNA downstream 166457 910338 ~ 929767 (-) True G309657
TU352172 lncRNA upstream 126499 1261954 ~ 1292007 (-) True G309805
TU352176 lncRNA upstream 479013 1614468 ~ 1616033 (-) True G309809
TU352300 lncRNA upstream 603563 1739018 ~ 1739223 (-) True G309928
TU352317 lncRNA upstream 690192 1825647 ~ 1825921 (-) True G309935
TU352341 lncRNA upstream 718610 1854065 ~ 1854369 (-) True G309947
CI01000095_00914578_00997684.mRNA mRNA downstream 98540 914578 ~ 997684 (-) True CI01000095_00914578_00997684
CI01000095_00790125_00813901.mRNA mRNA downstream 282008 789462 ~ 814216 (-) True CI01000095_00790125_00813901
CI01000095_00219520_00237347.mRNA mRNA downstream 858792 219436 ~ 237432 (-) True CI01000095_00219520_00237347
CI01000095_00183587_00185442.mRNA mRNA downstream 909319 183219 ~ 186905 (-) True CI01000095_00183587_00185442
CI01000095_00173095_00181309.mRNA mRNA downstream 914915 173095 ~ 181309 (-) True CI01000095_00173095_00181309
CI01000095_01200809_01460128.mRNA mRNA upstream 65354 1200809 ~ 1460128 (-) True CI01000095_01200809_01460128
CI01000095_01537561_01538239.mRNA mRNA upstream 402091 1537546 ~ 1539065 (-) True CI01000095_01537561_01538239
CI01000095_01543090_01636658.mRNA mRNA upstream 407635 1543090 ~ 1636658 (-) True CI01000095_01543090_01636658
CI01000095_01639699_01643103.mRNA mRNA upstream 504130 1639585 ~ 1643326 (-) True CI01000095_01639699_01643103
CI01000095_01675024_01682552.mRNA mRNA upstream 538506 1673961 ~ 1682780 (-) True CI01000095_01675024_01682552
TU351957 other downstream 8058 1085588 ~ 1088166 (-) True G309626
TU352106 other upstream 43142 1178597 ~ 1181758 (-) True G309753
TU352182 other upstream 1527875 2663330 ~ 2731704 (-) True G309815
TU352668 other upstream 2056643 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 2395457 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU353582 other upstream 3224206 4359661 ~ 4362626 (-) True G311036

Expression Profile