RNA id: TU352176



Basic Information


Item Value
RNA id TU352176
length 1340
lncRNA type intronic
GC content 0.34
exon number 3
gene id G309809
representative True

Chromosome Information


Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 1614468 ~ 1616033 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAACTTTATATGGACTTTACAGGATAGTAGGAAGAGCTTGGAATGTTGTGTGATCAAGGACATGACGCAAACCAGACTTGAACCTGTGAGCATGTGTGCTGCTGTGCTACAGCTCTGATAAAACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAACTGTGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAACTGTGGAAGGAAGGAAGAAAGAAAGAAAGAAAAAATATTGATGGTGGGCAGAAAAGAAAGAAATATGGAAATAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAAAGAAAGAAGAAAAAGAAATGTGGAAGGAGGGAATGAAGGAAGGAAGGAATATGGGAAGGAAAGAAAGAAATATGAATGGAGGGAAGAAAGAAAGAAATATTGATGGAGGGAAGAAAAGAAAGAAATATGGAAATAAAGAAGGAAGGAAGGAAGGAAAGAAGGGAAAGAAATATGGAAAGAAAAAAGAAAATAAATGTGGAAGGAAGGAATGAAGGACGGAATATGGGAAGGAAAGAAAGAAATATGGATGGAGGGAAGAAAGAAATAAATATTGATGGAAGAAAAGAAAGAAATATTGATGAAGGGAAGAAAAGAAAGAAATATGGAAATATGGAAATAAAGAAATAAAGGAAGGAAGAAAGGAAGAAAAGAATTTGGAAGGAAGGAAGGAAGGAAGGAATACGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAATAAATGTGGAAGCAAGGAATGGATGAAGGAAGGAATATGGGAAGGAAAGAAAGAAATATGGATGGAGGGAAATAAATAAATAAATATTGATGGAAGGAAGGATAGAAAGAAATATGGAAATAAAGAAATAAAGGAAGGAAGAAAGAAAGGAAGGAAAGAAAGAAATATGGAAGGAAGGAAGGAAGGAAGGAAGGAATACGAAAAGAAAGAAAGAAACAAAGAAGGGAATACGGATGGAAGGAAGGAATACAGAAAAAAGAAAGAAAGTACAGAAGGTAGGGAGGGAAAGGAAGAAAGGAATATGGAAGGAAGGAAAGAAAGAAATGAATATGGAAGGAAGGATAGAATGAAATAAAGGAAGGAAAGATGGAAGGAAGGGAGGAAAAGAAAGAAAAGAAGGAAATAAAGGAATATGGAAGGAAGGAAAAAAGAAATGTGTATGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGGAATACAGATGGAAGGAAGGAAGGAACAGAAAAAAGCAATATGGAAGGAAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU352172 lncRNA downstream 322461 1261954 ~ 1292007 (-) True G309805
TU351950 lncRNA downstream 479013 1096224 ~ 1135455 (-) True G309622
TU352069 lncRNA downstream 484018 1104785 ~ 1130450 (-) True G309719
TU352060 lncRNA downstream 546145 1067935 ~ 1068323 (-) True G309710
TU352034 lncRNA downstream 549721 1064180 ~ 1064747 (-) True G309684
TU352300 lncRNA upstream 122985 1739018 ~ 1739223 (-) True G309928
TU352317 lncRNA upstream 209614 1825647 ~ 1825921 (-) True G309935
TU352341 lncRNA upstream 238032 1854065 ~ 1854369 (-) True G309947
TU352342 lncRNA upstream 238620 1854653 ~ 1855158 (-) True G309948
TU352316 lncRNA upstream 245703 1861736 ~ 1893780 (-) True G309934
CI01000095_01537561_01538239.mRNA mRNA downstream 75403 1537546 ~ 1539065 (-) True CI01000095_01537561_01538239
CI01000095_01200809_01460128.mRNA mRNA downstream 154340 1200809 ~ 1460128 (-) True CI01000095_01200809_01460128
CI01000095_00914578_00997684.mRNA mRNA downstream 616784 914578 ~ 997684 (-) True CI01000095_00914578_00997684
CI01000095_00790125_00813901.mRNA mRNA downstream 800252 789462 ~ 814216 (-) True CI01000095_00790125_00813901
CI01000095_00219520_00237347.mRNA mRNA downstream 1377036 219436 ~ 237432 (-) True CI01000095_00219520_00237347
CI01000095_01639699_01643103.mRNA mRNA upstream 23552 1639585 ~ 1643326 (-) True CI01000095_01639699_01643103
CI01000095_01675024_01682552.mRNA mRNA upstream 57928 1673961 ~ 1682780 (-) True CI01000095_01675024_01682552
CI01000095_01699194_01700598.mRNA mRNA upstream 83036 1699069 ~ 1700816 (-) True CI01000095_01699194_01700598
CI01000095_01747706_01752312.mRNA mRNA upstream 131673 1747706 ~ 1752312 (-) True CI01000095_01747706_01752312
CI01000095_01753866_01754199.mRNA mRNA upstream 137812 1753845 ~ 1754199 (-) True CI01000095_01753866_01754199
TU352106 other downstream 432710 1178597 ~ 1181758 (-) True G309753
TU351957 other downstream 526302 1085588 ~ 1088166 (-) True G309626
TU352182 other upstream 1047297 2663330 ~ 2731704 (-) True G309815
TU352668 other upstream 1576065 3192098 ~ 3222668 (-) False G310207
TU353276 other upstream 1914879 3530912 ~ 3537233 (-) True CI01000095_03528759_03538412
TU353582 other upstream 2743628 4359661 ~ 4362626 (-) True G311036
TU354345 other upstream 3532992 5149025 ~ 5154494 (-) True G311701

Expression Profile